View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_349 (Length: 232)
Name: NF9913A_low_349
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_349 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 20019335 - 20019146
Alignment:
| Q |
23 |
cagtcttcttcaccaaaaaatgatagggatggaacctcaatgaggtacagattattcttgttcttctgctaaacttgttaatagccttttcccaaagact |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20019335 |
cagtcttcttcaccaaaaaatgatagggatggaacctcaatgaggtacagattgttcttgttcttctgctaaacttgttaacagccttttcccaaagact |
20019236 |
T |
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| Q |
123 |
aaacaaaaaactttatgtgcgcagtgcaacaagtggaagcaagagatcggcagatggagatcaagatgacagtaacaaagtatgtttatc |
212 |
Q |
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| T |
20019235 |
aaacaaaaaactttatgtgcgcagtgcaacaagtggaagcatgagatcggcagatggagatcaagatgacagtaacaaagtatgtttatc |
20019146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 20000512 - 20000323
Alignment:
| Q |
23 |
cagtcttcttcaccaaaaaatgatagggatggaacctcaatgaggtacagattattcttgttcttctgctaaacttgttaatagccttttcccaaagact |
122 |
Q |
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|||||| || |||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||| |||||||||||||| |
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| T |
20000512 |
cagtctgctgcaccgaaaaatgatagggatggaacctcaatgaggtacagtttgttctttttcttctggtaaacttgttaatagcattttcccaaagact |
20000413 |
T |
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| Q |
123 |
aaacaaaaaactttatgtgcgcagtgcaacaagtggaagcaagagatcggcagatggagatcaagatgacagtaacaaagtatgtttatc |
212 |
Q |
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| T |
20000412 |
gaacaaaaaaatttatgtgtgcagtgcagcaagtcgaagcaagagatcaacagatggagatcaagatgacagtaacaaagtatgtttatc |
20000323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 20009933 - 20009744
Alignment:
| Q |
23 |
cagtcttcttcaccaaaaaatgatagggatggaacctcaatgaggtacagattattcttgttcttctgctaaacttgttaatagccttttcccaaagact |
122 |
Q |
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|||||||| |||||||| |||||||||||||||||| |||||||||||| || |||||||||||||| |||||||||||||||| |||| | || | || |
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| T |
20009933 |
cagtcttcggcaccaaaacatgatagggatggaaccttaatgaggtacagtttgttcttgttcttctggtaaacttgttaatagcatttttctaaggcct |
20009834 |
T |
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| Q |
123 |
aaacaaaaaactttatgtgcgcagtgcaacaagtggaagcaagagatcggcagatggagatcaagatgacagtaacaaagtatgtttatc |
212 |
Q |
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||||||| ||| ||||||||||||| ||||||||||||||||||| || ||| |||||||||||| |||||| ||||||||||||| |
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| T |
20009833 |
gaacaaaatccttaatgtgcgcagtgccgcaagtggaagcaagagatcaacaaatgcagatcaagatgatagtaacgaagtatgtttatc |
20009744 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 20029393 - 20029204
Alignment:
| Q |
23 |
cagtcttcttcaccaaaaaatgatagggatggaacctcaatgaggtacagattattcttgttcttctgctaaacttgttaatagccttttcccaaagact |
122 |
Q |
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||||||||| || ||||| ||||||||||||||||||||| ||||||||| || |||||||||||||| |||||||||||||||| |||| | |||| | |
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| T |
20029393 |
cagtcttctgcatcaaaacatgatagggatggaacctcaaggaggtacagtttgttcttgttcttctggtaaacttgttaatagcatttttctaaagctt |
20029294 |
T |
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| Q |
123 |
aaacaaaaaactttatgtgcgcagtgcaacaagtggaagcaagagatcggcagatggagatcaagatgacagtaacaaagtatgtttatc |
212 |
Q |
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||||||| ||||| ||||||| | | |||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
20029293 |
gaacaaaatcgtttatctgcgcagggaagcaagtggaagtaagagatcaacagatggagatcaagatgatagtaacaaagtatgtttatc |
20029204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 208
Target Start/End: Original strand, 12573043 - 12573227
Alignment:
| Q |
23 |
cagtcttcttcaccaaaaaatgatagggatggaacctcaatgaggtacagattattcttgttcttctgctaaacttgttaatagccttttcccaaagact |
122 |
Q |
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||||||||| |||| |||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||| |||||| ||| || |
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| T |
12573043 |
cagtcttctgcacccaaaaatgacagggatggaacctcaatgaggtacaatttgttcttgttcttctgctaaacttgttggtagtaatttccc-aagtct |
12573141 |
T |
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| Q |
123 |
aaacaaaaaactttatgtgcgcagtgcaacaagtggaagcaagagatcggcagatggagatcaagatgacagtaacaaagtatgtt |
208 |
Q |
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|| |||||| | | ||||| ||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
12573142 |
gaataaaaaattatgtgtgcacagtgcagcaagtggaagcaagagatcaccagatagagatcaagatgacagtaacaaagtatgtt |
12573227 |
T |
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