View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_350 (Length: 232)
Name: NF9913A_low_350
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_350 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 21831965 - 21831862
Alignment:
| Q |
23 |
caaatatggtatcaacaaaacaagttcatcttatagagatctcatcaaccacatggagttcgaacttgaaataacctgaaaatacatttaaaataagcaa |
122 |
Q |
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| T |
21831965 |
caaatatggtatcaacaaaacaagttcatcttatagagatctcatcaaccacatggagttcgaacttgaaataacctgaaaatacatttaaaataagcaa |
21831866 |
T |
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| Q |
123 |
aaaa |
126 |
Q |
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|||| |
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| T |
21831865 |
aaaa |
21831862 |
T |
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Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 118 - 217
Target Start/End: Original strand, 23333748 - 23333847
Alignment:
| Q |
118 |
agcaaaaaattacataaaacaaacttatcaacctctttgagggagtactgcttcagctgcattctggcacacaattttatcggtcaacttcgtgatgtcc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
23333748 |
agcaaaaaattacataaaacaaacttatcaacctcttggggggagtactgcttcagctgcattccggcacacaattttatcggtcaacttcgttatgtcc |
23333847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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