View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_353 (Length: 231)

Name: NF9913A_low_353
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_353
NF9913A_low_353
[»] chr1 (11 HSPs)
chr1 (1-231)||(2453006-2453236)
chr1 (1-231)||(36207315-36207545)
chr1 (1-231)||(16042125-16042355)
chr1 (1-231)||(6310883-6311113)
chr1 (1-227)||(18148788-18149014)
chr1 (1-231)||(37390041-37390271)
chr1 (1-231)||(2329269-2329496)
chr1 (21-227)||(48233498-48233704)
chr1 (1-231)||(48775224-48775454)
chr1 (1-78)||(48238519-48238596)
chr1 (111-199)||(52500794-52500882)
[»] chr6 (8 HSPs)
chr6 (1-231)||(2202068-2202298)
chr6 (1-231)||(10187644-10187874)
chr6 (1-231)||(15333743-15333973)
chr6 (3-219)||(18344227-18344443)
chr6 (1-227)||(30881427-30881652)
chr6 (1-200)||(29639948-29640147)
chr6 (1-200)||(31510119-31510318)
chr6 (147-223)||(12517520-12517596)
[»] chr4 (8 HSPs)
chr4 (1-227)||(1860777-1861003)
chr4 (1-231)||(13337335-13337565)
chr4 (1-231)||(35856007-35856237)
chr4 (1-231)||(49710273-49710502)
chr4 (1-231)||(38518196-38518426)
chr4 (1-231)||(49786717-49786947)
chr4 (74-227)||(618117-618270)
chr4 (111-227)||(55559016-55559132)
[»] scaffold0073 (3 HSPs)
scaffold0073 (8-231)||(32039-32262)
scaffold0073 (1-99)||(19557-19655)
scaffold0073 (152-231)||(2-81)
[»] chr5 (13 HSPs)
chr5 (1-231)||(39883283-39883513)
chr5 (1-231)||(25542682-25542912)
chr5 (1-231)||(8428463-8428693)
chr5 (1-231)||(14192701-14192931)
chr5 (1-231)||(37373036-37373266)
chr5 (1-231)||(27881184-27881414)
chr5 (1-227)||(17871531-17871756)
chr5 (1-231)||(3690077-3690307)
chr5 (1-231)||(3876480-3876710)
chr5 (3-231)||(37261417-37261633)
chr5 (111-227)||(30346522-30346638)
chr5 (111-227)||(10025188-10025304)
chr5 (111-199)||(24629867-24629955)
[»] scaffold1139 (1 HSPs)
scaffold1139 (1-216)||(1100-1315)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-231)||(186654-186884)
[»] chr2 (12 HSPs)
chr2 (1-227)||(24268963-24269189)
chr2 (1-231)||(17683718-17683948)
chr2 (1-231)||(24245925-24246155)
chr2 (1-231)||(21395470-21395700)
chr2 (1-231)||(28666061-28666291)
chr2 (1-225)||(27192589-27192813)
chr2 (1-225)||(27509474-27509698)
chr2 (1-225)||(27842403-27842627)
chr2 (1-231)||(37824895-37825125)
chr2 (1-227)||(41920066-41920292)
chr2 (1-81)||(35609785-35609865)
chr2 (122-231)||(35609874-35609983)
[»] chr7 (9 HSPs)
chr7 (1-231)||(5828444-5828674)
chr7 (1-231)||(21069951-21070181)
chr7 (1-231)||(7036820-7037050)
chr7 (1-231)||(9001034-9001264)
chr7 (1-231)||(12785867-12786097)
chr7 (1-231)||(12781037-12781267)
chr7 (1-227)||(22843904-22844129)
chr7 (111-227)||(42232209-42232325)
chr7 (30-75)||(18939139-18939184)
[»] scaffold0550 (1 HSPs)
scaffold0550 (1-231)||(461-691)
[»] chr8 (6 HSPs)
chr8 (1-231)||(25218454-25218684)
chr8 (3-227)||(21113637-21113861)
chr8 (1-231)||(7821938-7822168)
chr8 (1-231)||(30307277-30307507)
chr8 (1-231)||(25208936-25209151)
chr8 (1-98)||(31978549-31978646)
[»] scaffold0090 (1 HSPs)
scaffold0090 (1-231)||(48825-49055)
[»] chr3 (12 HSPs)
chr3 (1-231)||(13530139-13530369)
chr3 (1-231)||(32871-33101)
chr3 (1-227)||(10110700-10110926)
chr3 (1-227)||(10000507-10000733)
chr3 (1-231)||(50410272-50410498)
chr3 (1-231)||(11362359-11362591)
chr3 (1-227)||(10237655-10237880)
chr3 (1-231)||(10968671-10968900)
chr3 (1-231)||(10038740-10038960)
chr3 (1-231)||(11368747-11368969)
chr3 (4-164)||(52918169-52918328)
chr3 (1-75)||(46913171-46913245)
[»] scaffold0356 (1 HSPs)
scaffold0356 (27-231)||(17765-17969)
[»] scaffold0134 (1 HSPs)
scaffold0134 (1-225)||(5155-5378)
[»] scaffold0003 (2 HSPs)
scaffold0003 (1-231)||(182911-183141)
scaffold0003 (1-231)||(165631-165863)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-231)||(321225-321455)
[»] scaffold0262 (1 HSPs)
scaffold0262 (1-225)||(19106-19329)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-99)||(16784-16882)
[»] scaffold0107 (1 HSPs)
scaffold0107 (82-231)||(39937-40086)
[»] scaffold0118 (1 HSPs)
scaffold0118 (111-227)||(28612-28728)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 2453236 - 2453006
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  2453236 cgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcggaattcacaaagtctataagtgacatcaacggatttgttgtgtt 2453137  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||| |||||||||||||| ||||||||    
T  2453136 cgatatgagcaaatcttcaggaatttctaccttcatttcaccattctcatttgaagcgtcgttgccgtctccaattgagagtatccacttgtcaaaatta 2453037  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     ||||||||||||||||||||||||||||||    
T  2453036 gcaatttcttcatgctctgcaggtaccgaag 2453006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 36207315 - 36207545
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36207315 cgagtattcccctttcttgaaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtc 36207414  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||| | | ||||||| ||||||| |||||||||||||| ||||||||||||| ||| | ||||| |||||||||||||||||||||||    
T  36207415 ggatatgagaaaatcatcaggaatttctaccttcaattcaccattctcatccgaagcgtcgttgccgtcttcaattgagagtatccacttgccaaaatta 36207514  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||| ||||||||||||||    
T  36207515 tcaatttcttcctgctttgcaggtaccgaag 36207545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 16042125 - 16042355
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||| ||| |||| || |||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||     
T  16042125 cgagtattcccctttcttggcaaaatagctgggcaccaaggttatcattcagattgggatacacaaagtctataagcgacatcaacggatttgttgtgtc 16042224  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| |||||||||||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  16042225 cgatatcagcaaatcttcaggaatttctaccttcatttcaccattctcatccgaagcgtcgttgccgtctccaattgagagtatccacttgccaaaatta 16042324  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| ||||||||| |||||||||    
T  16042325 gcaatttcttcctgctctgcatgtaccgaag 16042355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 6311113 - 6310883
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  6311113 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtc 6311014  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| |||||| ||| ||||||  ||| ||||||||||| |||||||    
T  6311013 tgatatcagcgaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaatggagactatccacttgcaaaaatta 6310914  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||||||||||||||||||    
T  6310913 gcaatttcttcctgctctgcaggtaccgaag 6310883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 18148788 - 18149014
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| ||||||||||||     
T  18148788 cgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaattgagatacacaaagtcgataagtgacatcaacagatttgttgtgtc 18148887  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| |  |||||| |||||||||||||||||||| ||||||||||  ||| ||| ||||||| |||||||||||||||||||||||    
T  18148888 cgatatgagaaaatcttcataaatttctaccttcatttcaccattctccttcgaagcgttattgccgtctccaattcagagtatccacttgccaaaatta 18148987  T
Q  201 acaatttcttcatgctctgcaggtacc 227  Q
     |||||||||  |||||||||||||||    
T  18148988 gcaatttctttctgctctgcaggtacc 18149014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 37390271 - 37390041
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  37390271 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtc 37390172  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| || ||| ||| ||||||| ||| ||||||||||| |||||||    
T  37390171 tgatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatctttgccgtctccaattgagaatatccacttgcaaaaatta 37390072  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||||||||||||||||||    
T  37390071 gcaatttcttcctgctctgcaggtaccgaag 37390041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 2329269 - 2329496
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    ||||||||||||||||||| |||| ||| || ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||     
T  2329269 cgagtattcccctttcttgaaaaaatagtggatcaccaaggttatcattcaaatcgggatacac---gtctataagtgacatcaacggatttgttgtgtc 2329365  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| |||||||||| ||||||||||| ||||||||||||| ||| || |||| |||||||||||||||||||||||    
T  2329366 cgatatgagaaaatcttcaggaatttctaccttcattttaccattctcatccgaagcgtcgttgccgtctctaattgagagtatccacttgccaaaatta 2329465  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| ||||||||||||| |||||    
T  2329466 gcaatttcttcctgctctgcaggtaacgaag 2329496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 48233498 - 48233704
Alignment:
Q  21 aaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgttagatattaggtaatctttaa 120  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||  |||||| |     
T  48233498 aaaaatagagggtcgccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcagcggatttgttgtgttcgatatgagtaaatcttcag 48233597  T
Q  121 gaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaattaacaatttcttcatgctctgc 220  Q
    ||||||| ||||||||||| ||||||||||  |||||||||||||||| || | || ||||||| |||||| ||||||||  ||||||||| ||||||||    
T  48233598 gaatttctaccttcatttccccattctcatctgaagcgtcgttgtcgtctcaagttgagagtattcacttgtcaaaattaggaatttcttcctgctctgc 48233697  T
Q  221 aggtacc 227  Q
    |||||||    
T  48233698 aggtacc 48233704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 48775454 - 48775224
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    ||||||||||| ||||||||||||  ||| ||||||||| |||||||||| |||||||||| ||||||| ||| ||||||||||| | |||||||||||     
T  48775454 cgagtattcccttttcttggaaaaagagcaggtcaccaatgttatcattctaatcgggatatacaaagtgtattagtgacatcaaagaatttgttgtgtc 48775355  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  ||||||   ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  48775354 ggatatgagcaaatcttcgggaatttctaccttcatttcaccattctcattcgaagcgtcgttgccgtctccaattgagagtatccacttgccaaaatta 48775255  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     || ||||||  ||||||| |||| ||||||    
T  48775254 gcagtttctttctgctctgtaggtcccgaag 48775224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 48238596 - 48238519
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtg 78  Q
    |||||||||| ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48238596 cgagtattcctctttcttggaaaaatagagggtcgccaaggttatcattcaaatcgggatacacaaagtctataagtg 48238519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 52500794 - 52500882
Alignment:
Q  111 taatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatt 199  Q
    ||||||| | ||||||| |||||||||| ||||||||||| |||||||| |||||||| ||||||| |||||||||||||||| |||||    
T  52500794 taatcttcaggaatttctaccttcatttaaccattctcatccgaagcgttgttgtcgtctccaattcagagtatccacttgccgaaatt 52500882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 2202298 - 2202068
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2202298 cgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttattgtgtt 2202199  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  ||||||   ||||||| || |||||||||||||||||||| |||||||||||| | | ||||||| |||||||||||||||||||||||    
T  2202198 cgatatgagcaaatcttcgggaatttctacattcatttcaccattctcatttgaagcgtcgttgccttctccaattgagagtatccacttgccaaaatta 2202099  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||||||||||||| |||||||||    
T  2202098 gcaatttcttcatgctctgcaagtaccgaag 2202068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 10187644 - 10187874
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  10187644 cgagtattcccttttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggattttttgtgtc 10187743  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
      |||| ||  ||| || | ||||||| |||||||||| ||||||||||| ||||||||||||| ||| ||||||| |||| |||||| ||| |||||||    
T  10187744 caatatgagcaaatattcaggaatttctaccttcattttaccattctcatccgaagcgtcgttgccgtctccaattgagagcatccacgtgcgaaaatta 10187843  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||||| |||||| |||||    
T  10187844 gcaatttcttcctgctctacaggtatcgaag 10187874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 15333743 - 15333973
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    ||||||||||| ||| |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||  ||     
T  15333743 cgagtattcccatttgttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaagtctattagtgacatcaacggatttgttacgta 15333842  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| |   |||||| | ||||||| ||||||||||||| |||||||| ||||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  15333843 cgatatcaacaaatcttcaggaatttctaccttcatttcactattctcatccgaagcgtcgttgccgtctccaattgagagtatccacttgccaaaatta 15333942  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| ||||||||||||| |||||    
T  15333943 gcaatttcttcttgctctgcaggtatcgaag 15333973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 18344227 - 18344443
Alignment:
Q  3 agtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgttag 102  Q
    |||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |    
T  18344227 agtattcccctttcttggaaaaatagatggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatgaacggatttgttgtgtccg 18344326  T
Q  103 atattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaattaac 202  Q
    |||| ||  |||||| | ||||||| ||||||||||||| ||||||||  ||||| |||||||||| ||||||| ||||||| |||||| ||||||||      
T  18344327 atatgagcaaatcttcaggaatttctaccttcatttcactattctcatctgaagcttcgttgtcgtctccaattgagagtattcacttgtcaaaattagg 18344426  T
Q  203 aatttcttcatgctctg 219  Q
    ||||||||| |||||||    
T  18344427 aatttcttcctgctctg 18344443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 30881427 - 30881652
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||     
T  30881427 cgagtatttccctttcttggaaaaatagcgggtcaccaaggttatcatttaaatcgagatacacaatgtctataagtgacatcaacggatttgttgtgtc 30881526  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||| |||||| ||||||| ||||| | | || |||| |||||||||| ||||||||||||    
T  30881527 cgatatgagcaaatcttcaggaatttctaccttcatttcacca-tctcatccgaagcgccgttgccttctctaattgagagtatccatttgccaaaatta 30881625  T
Q  201 acaatttcttcatgctctgcaggtacc 227  Q
     |||||| ||| |||||||||||||||    
T  30881626 gcaatttattcctgctctgcaggtacc 30881652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 29640147 - 29639948
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |    
T  29640147 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcaggatacacaaagtctataagtgacatcaacagatttgttgtggt 29640048  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| |||||| ||| ||||||| ||||||||||||||| |||||||    
T  29640047 tgatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaatta 29639948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 31510318 - 31510119
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    ||||||||||||||||||| |||| |||  ||||||||||||||||||||| ||  |||||||||||||||||||||||||||||| ||||||||||| |    
T  31510318 cgagtattcccctttcttgaaaaaatagttggtcaccaaggttatcattcagattaggatacacaaagtctataagtgacatcaacagatttgttgtggt 31510219  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| |  |||||| ||||||||||||||||| |||  |||| | |||||| ||| ||||||| ||||||||||||||| |||||||    
T  31510218 tgatatcagcaaatcttaagaaatttctaccttcatttcaccattgtcacccgaaacatcgttgccgtctccaattgagagtatccacttgcaaaaatta 31510119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 12517520 - 12517596
Alignment:
Q  147 tcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaattaacaatttcttcatgctctgcagg 223  Q
    |||| ||||| ||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| |||||||||||    
T  12517520 tcatccgaagtgtcgttgtcgtctccaattgagagtatccacttgccaaaattagcaatttcttcctgctctgcagg 12517596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 1860777 - 1861003
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||     
T  1860777 cgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtgacatcaacagatttgttgtgtc 1860876  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||||| ||||||| |||||||||||||||||||||| |||||||| |||||||| ||||||| |||||||||||||||||||||||    
T  1860877 cgatatgagcaaatctttaggaatttctaccttcatttcaccattctcatccgaagcgttgttgtcgtctccaattcagagtatccacttgccaaaatta 1860976  T
Q  201 acaatttcttcatgctctgcaggtacc 227  Q
     |||||||||  |||||||||||||||    
T  1860977 gcaatttctttctgctctgcaggtacc 1861003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 13337335 - 13337565
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||     
T  13337335 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtgacataaacggatttgttgtgtc 13337434  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| |||||||||| ||||||| ||||||||||||||| |||||||    
T  13337435 cgatatcagcaaatcttcatgaatttctaccttcatttcaccattgtcacccgaagcatcgttgtcgtctccaattgagagtatccacttgcaaaaatta 13337534  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||||||||||||||||||    
T  13337535 gcaatttcttcctgctctgcaggtaccgaag 13337565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 35856007 - 35856237
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  35856007 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtc 35856106  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| |||||| ||| ||||||| ||||||||||||||| |||||||    
T  35856107 tgatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaatta 35856206  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||||||||||||||||||    
T  35856207 gcaatttcttcctgctctgcaggtaccgaag 35856237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 49710273 - 49710502
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||     
T  49710273 cgagtattcccctttcttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaa-ggatttgttgtgtc 49710371  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||| |||||| |||||| ||| ||||||| |||||||||||||||||||||||    
T  49710372 cgatatcagcaaatcttcaggaatttctaccttcatttcaccattttcatccgaagcatcgttgccgtgtccaattgagagtatccacttgccaaaatta 49710471  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||  || ||||||||||||||||    
T  49710472 gcaatttctttctgttctgcaggtaccgaag 49710502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 38518196 - 38518426
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||     
T  38518196 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcatttagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtc 38518295  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  | |||| |||||| ||| ||||||| ||||||||||||||| |||||||    
T  38518296 tgatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccaaagcatcgttgccgtctccaattgagagtatccacttgcaaaaatta 38518395  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||||||||||||||||||    
T  38518396 gcaatttcttcctgctctgcaggtaccgaag 38518426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 49786947 - 49786717
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||     
T  49786947 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacagagtctataagtgacatcaacggatttgttgtgtc 49786848  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| |||||| ||| ||||||| ||||||||||||||| |||||||    
T  49786847 tgatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaatta 49786748  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| ||||||| |||||||||||    
T  49786747 gcaatttcttcctgctctgtaggtaccgaag 49786717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 227
Target Start/End: Complemental strand, 618270 - 618117
Alignment:
Q  74 aagtgacatcaacggatttgttgtgttagatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatcca 173  Q
    ||||||||| ||||||||||||||||  ||||| ||  |||||| | ||||||| ||||||||||||||||||||||  ||||| |||||||||| ||||    
T  618270 aagtgacatgaacggatttgttgtgtccgatatgagcaaatcttcaggaatttctaccttcatttcaccattctcatctgaagcttcgttgtcgtctcca 618171  T
Q  174 atttagagtatccacttgccaaaattaacaatttcttcatgctctgcaggtacc 227  Q
    ||| ||||||| ||||||  |||||||  ||||||||| |||||||||| ||||    
T  618170 attgagagtattcacttgttaaaattaggaatttcttcctgctctgcagatacc 618117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 55559132 - 55559016
Alignment:
Q  111 taatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaattaacaatttctt 210  Q
    ||||||| | ||||||| ||||||||||||||||||||||  ||||||| |||| ||| ||||||| ||||||||||||||||||||||| |||||||||    
T  55559132 taatcttcaggaatttctaccttcatttcaccattctcatctgaagcgttgttgccgtctccaattcagagtatccacttgccaaaattagcaatttctt 55559033  T
Q  211 catgctctgcaggtacc 227  Q
      |||||||||||||||    
T  55559032 tctgctctgcaggtacc 55559016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 32039 - 32262
Alignment:
Q  8 tcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgttagatatt 107  Q
    ||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||     
T  32039 tcccctttcttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtccgatatc 32138  T
Q  108 aggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaattaacaattt 207  Q
    ||  |||||| | ||||||| |||||||||||||||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  32139 agcaaatcttcaggaatttctaccttcatttcaccattctcatccgaagcatcgttgccgtatccaattgagagtatccacttgccaaaattagcaattt 32238  T
Q  208 cttcatgctctgcaggtaccgaag 231  Q
    |||| |||||||||||||||||||    
T  32239 cttcctgctctgcaggtaccgaag 32262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 19557 - 19655
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgt 99  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  19557 cgagtattcccctttcttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaagtttataagtgacatcaacagatttgttgtgt 19655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 2 - 81
Alignment:
Q  152 cgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaattaacaatttcttcatgctctgcaggtaccgaag 231  Q
    |||||| |||||| ||| ||||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||||||||    
T  2 cgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaattagcaatttcttcttgctctgcaggtaccgaag 81  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 39883283 - 39883513
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||| ||| |||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  39883283 cgagtattcccctttcttggcaaaatagctgggcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtc 39883382  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||||| |||| || |||||||||||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  39883383 cgatatcagcaaatctttaggaatatctaccttcatttcaccattctcatccgaagcgtcgttgccgtctccaattgagagtatccacttgccaaaatta 39883482  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||||||||||||| |||||||||    
T  39883483 gcaatttcttcatgctctgcatgtaccgaag 39883513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 25542912 - 25542682
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||     
T  25542912 cgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacatatttgttgtgtc 25542813  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| |||||||||||||||||||||| |||||||| |||| ||| ||||||| ||||||||||||||||||| |||    
T  25542812 cgatatgagaaaatcttcaggaatttctaccttcatttcaccattctcatccgaagcgttgttgccgtctccaattgagagtatccacttgccaaagtta 25542713  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||  |||| ||||||||||||||    
T  25542712 gcaatttctttctgctttgcaggtaccgaag 25542682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 8428693 - 8428463
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  8428693 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtc 8428594  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| |||||| ||| ||||||| ||||||||||||||| |||||||    
T  8428593 tgatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaatta 8428494  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||||||||||||||||||    
T  8428493 gcaatttcttcctgctctgcaggtaccgaag 8428463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 14192931 - 14192701
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  14192931 cgagtattcccctttcttggaaaaatagcggatcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacagatttgttgtgtc 14192832  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| |  |||||| ||||||||||||||||||| || |||| | |||||| ||| ||||||| |||||||||||||| ||||||||    
T  14192831 cgatatgagcaaatcttcagaaatttctaccttcatttcaccattctgatccgaaacttcgttgccgtctccaattgagagtatccacttgtcaaaatta 14192732  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| | |||| ||||||||||||    
T  14192731 gcaatttcttcctactctacaggtaccgaag 14192701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 37373036 - 37373266
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||| ||||| |||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||     
T  37373036 cgagtattcccctttcttcgaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttatgtc 37373135  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| |||||| ||| ||||||| ||||||||||||||| |||||||    
T  37373136 tgatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaatta 37373235  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||||||||||||||||||    
T  37373236 gcaatttcttcctgctctgcaggtaccgaag 37373266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 27881184 - 27881414
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||     
T  27881184 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgggtc 27881283  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | || |||| ||||| ||||||||||| |||| |||||| |||||| ||| ||||||| |||||||||||||||||||||||    
T  27881284 cgatatcagcaaatcttcaggagtttctacctttatttcaccattgtcatccgaagcatcgttgccgtctccaattgagagtatccacttgccaaaatta 27881383  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||| | ||||||||| |||||||||    
T  27881384 gcaatttctacctgctctgcatgtaccgaag 27881414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 17871756 - 17871531
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||     
T  17871756 cgagtatttccctttcttggaaaaatagcgggtcaccaaggttatcatttaaatcgagatacacaatgtctataagtgacatcaacggatttgttgtgtc 17871657  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||| |||||| ||||||| ||||| | | || |||| |||||||||| ||||||||||||    
T  17871656 cgatatgagcaaatcttcaggaatttctaccttcatttcacca-tctcatccgaagcgccgttgccttctctaattgagagtatccatttgccaaaatta 17871558  T
Q  201 acaatttcttcatgctctgcaggtacc 227  Q
     |||||| ||| |||||||||||||||    
T  17871557 gcaatttattcctgctctgcaggtacc 17871531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 3690077 - 3690307
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    ||||||||| | ||||||| ||||  || |||||||||| ||||||||||||||||||||| |||||||| || ||||||||||||| ||||||||| |     
T  3690077 cgagtattcacttttcttgaaaaaagagtgggtcaccaatgttatcattcaaatcgggatatacaaagtccattagtgacatcaacgaatttgttgtatc 3690176  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||||  ||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||||||||||    
T  3690177 ggatatgagcaaatctttgggaatttctaccttcatttcaccattctcattcgaagtgtcgttgccgtctccaattgagagtatccacttgccaaaatta 3690276  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     || ||||||| |||||||||||| ||||||    
T  3690277 gcagtttcttcctgctctgcaggtcccgaag 3690307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 3876710 - 3876480
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    ||||||||| | ||||||| ||||  || ||||| |||| ||||||||||||||||||||| |||||||| || ||||||||||||| ||||||||| |     
T  3876710 cgagtattcacttttcttgaaaaaagagtgggtccccaatgttatcattcaaatcgggatatacaaagtccattagtgacatcaacgaatttgttgtatc 3876611  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||||  ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  3876610 ggatatgagcaaatctttgggaatttctaccttcatttcaccattctcattcgaagcgtcgttgccgtctccaattgagagtatccacttgccaaaatta 3876511  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     || ||||||| |||||||||||| ||||||    
T  3876510 gcagtttcttcctgctctgcaggtcccgaag 3876480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 3 - 231
Target Start/End: Original strand, 37261417 - 37261633
Alignment:
Q  3 agtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgttag 102  Q
    ||||||||||||||||| |||| || |||||||  ||||||||||||||||| |||||||||||||          ||||||||||  |||||||||       
T  37261417 agtattcccctttcttgaaaaaataacgggtcattaaggttatcattcaaattgggatacacaaag----------acatcaacgg--ttgttgtgtcca 37261504  T
Q  103 atattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaattaac 202  Q
    |||| ||  ||||||    |||||  |||||| ||||||||||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||||| |    
T  37261505 atataagcaaatcttcggaaatttataccttcgtttcaccattctcatccgaagcgtcgttgccgtctccaattgagagtatccacttgccaaaattagc 37261604  T
Q  203 aatttcttcatgctctgcaggtaccgaag 231  Q
    ||||||||| ||||||||| |||||||||    
T  37261605 aatttcttcttgctctgcacgtaccgaag 37261633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 30346638 - 30346522
Alignment:
Q  111 taatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaattaacaatttctt 210  Q
    ||||||| | ||||||| |||||||||||||||||||||| |||||||| |||| ||| ||||||| ||||||||||||||||||||||| |||||||||    
T  30346638 taatcttcaggaatttctaccttcatttcaccattctcatccgaagcgttgttgccgtctccaattcagagtatccacttgccaaaattagcaatttctt 30346539  T
Q  211 catgctctgcaggtacc 227  Q
      |||||||||||||||    
T  30346538 tctgctctgcaggtacc 30346522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 10025188 - 10025304
Alignment:
Q  111 taatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaattaacaatttctt 210  Q
    ||||||||| ||||||| |||||||||||||||||||||| |||||||| |||  ||| || |||| ||||||||||||||||||||||| |||||||||    
T  10025188 taatctttaggaatttctaccttcatttcaccattctcatccgaagcgttgttaccgtctctaattcagagtatccacttgccaaaattagcaatttctt 10025287  T
Q  211 catgctctgcaggtacc 227  Q
      |||||||||||||||    
T  10025288 tctgctctgcaggtacc 10025304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 24629955 - 24629867
Alignment:
Q  111 taatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatt 199  Q
    ||||||| | ||||||| |||||||||| ||||||||||| |||||||| |||||||| ||||||| |||||||||||||||| |||||    
T  24629955 taatcttcaggaatttctaccttcatttaaccattctcatccgaagcgttgttgtcgtctccaattcagagtatccacttgccgaaatt 24629867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 1100 - 1315
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1100 cgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtc 1199  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| |||||||||||||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  1200 cgatatgagcaaatcttcaggaatttctaccttcatttcaccattctcatccgaagagtcgttgtcgtctccaattgagagtatccacttgccaaaatta 1299  T
Q  201 acaatttcttcatgct 216  Q
      ||||||||| ||||    
T  1300 gaaatttcttcctgct 1315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 186654 - 186884
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  186654 cgagtattcccctttattggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacagatttgttgtgta 186753  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| |||||||||||||||||||||| |||||||| |||| ||| ||||||| |||||||||||||||||||||||    
T  186754 cgatatgagcaaatcttcaggaatttctaccttcatttcaccattctcatccgaagcgttgttgccgtctccaattgagagtatccacttgccaaaatta 186853  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||  ||||||||| |||||||||    
T  186854 gcaatttctttctgctctgcaagtaccgaag 186884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 24269189 - 24268963
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||     
T  24269189 cgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtgacatcaacagatttgttgtgtc 24269090  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| |||||||||||||||||||||| |||||||| |||| ||| ||||||| |||||||||||||||||||||||    
T  24269089 cgatatgagcaaatcttcaggaatttctaccttcatttcaccattctcatccgaagcgttgttgccgtctccaattcagagtatccacttgccaaaatta 24268990  T
Q  201 acaatttcttcatgctctgcaggtacc 227  Q
     |||||||||  |||||||||||||||    
T  24268989 gcaatttctttctgctctgcaggtacc 24268963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 17683948 - 17683718
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  17683948 cgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtc 17683849  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
      |||| ||  ||| || | ||||||| |||||||||| |||||||||||  |||||||||||| ||| ||||||| ||||||||||||||| |||||||    
T  17683848 caatatgagcgaatattcaggaatttctaccttcattttaccattctcatctgaagcgtcgttgccgtctccaattgagagtatccacttgcaaaaatta 17683749  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||||| |||||| |||||    
T  17683748 gcaatttcttcctgctctacaggtatcgaag 17683718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 24245925 - 24246155
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||     
T  24245925 cgagtattcccctttcttgaaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaggtctataagtgacatccacggatttgttgtgtc 24246024  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     | ||| ||  |||||||| ||||||| |||||||||||||||||||||| | ||||||||||| ||| ||||||| |||| |||||| |||||| ||||    
T  24246025 cgttatgagcaaatctttaggaatttctaccttcatttcaccattctcatccaaagcgtcgttgccgtctccaattgagagaatccacatgccaacatta 24246124  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||||||||||||||||||    
T  24246125 gcaatttcttcctgctctgcaggtaccgaag 24246155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 21395470 - 21395700
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||     
T  21395470 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatatacaaagtctataagcgacatcaacggatttgttgtgtc 21395569  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| |||||||||||||||||||||| |||||| |||||| ||| ||||||| |||||||||||||||| ||||||    
T  21395570 cgatatcagcaaatcttcaggaatttctaccttcatttcaccattctcatccgaagcatcgttgccgtctccaattgagagtatccacttgccgaaatta 21395669  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| || ||||||||||||||||    
T  21395670 gcaatttcttcctgatctgcaggtaccgaag 21395700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 28666291 - 28666061
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28666291 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacagagtctataagtgacatcaacggatttgttgtgtt 28666192  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| |||||| ||| ||||||| ||||||||||||||| |||||||    
T  28666191 tgatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaatta 28666092  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| ||||||| |||||||||||    
T  28666091 gcaatttcttcctgctctgtaggtaccgaag 28666061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 27192589 - 27192813
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  27192589 cgagtattcccctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacagatttgttgtgtc 27192688  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||||| ||||||| ||||||||||||||||||||||  |||||||||||| |||  ||| || |||||||||||||| ||||||||    
T  27192689 cgatatgagcaaatctttaggaatttctaccttcatttcaccattctcatctgaagcgtcgttgccgtcaccagttgagagtatccacttgtcaaaatta 27192788  T
Q  201 acaatttcttcatgctctgcaggta 225  Q
      ||||||||| |||||| ||||||    
T  27192789 tgaatttcttcctgctctacaggta 27192813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 27509474 - 27509698
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||     
T  27509474 cgagtattcccctttcttggaaaaatagcaggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgatatcaacgaatttgttgtgtc 27509573  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     || || ||  |||||||| ||||||| |||||||| |||||||||||||  ||||||||||||  || ||||||| |||||||| ||||||||||||||    
T  27509574 cgacatgagcaaatctttaggaatttctaccttcatctcaccattctcatctgaagcgtcgttgctgtctccaattgagagtatctacttgccaaaatta 27509673  T
Q  201 acaatttcttcatgctctgcaggta 225  Q
     |||||||||| |||||||||||||    
T  27509674 gcaatttcttcctgctctgcaggta 27509698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 27842403 - 27842627
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  27842403 cgagtattcccctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacagatttgttgtgtc 27842502  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||||| ||||||| ||||||||||||||||||||||  |||||||||||| |||  ||| || |||||||||||||| ||||||||    
T  27842503 cgatatgagcaaatctttaggaatttctaccttcatttcaccattctcatctgaagcgtcgttgccgtcaccagttgagagtatccacttgtcaaaatta 27842602  T
Q  201 acaatttcttcatgctctgcaggta 225  Q
      ||||||||| |||||| ||||||    
T  27842603 tgaatttcttcctgctctacaggta 27842627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 37825125 - 37824895
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37825125 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcatttagatcgggatacacagagtctataagtgacatcaacggatttgttgtgtt 37825026  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| |||||| ||| ||||||| ||||||||||||||| |||||||    
T  37825025 tgatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaatta 37824926  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| ||||||| |||||||||||    
T  37824925 gcaatttcttcctgctctgtaggtaccgaag 37824895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 41920292 - 41920066
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  41920292 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtc 41920193  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| |||||| ||| ||||||| ||||||||||||||| |||||||    
T  41920192 tgatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaatta 41920093  T
Q  201 acaatttcttcatgctctgcaggtacc 227  Q
     |||||||||| |||||| ||||||||    
T  41920092 tcaatttcttcctgctctacaggtacc 41920066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 35609785 - 35609865
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgaca 81  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  35609785 cgagtattcccctttcttggaaaaatagcgggtcaccaatgttatcattcaaatcggaatacacaaagtctataagtgaca 35609865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 35609874 - 35609983
Alignment:
Q  122 aatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaattaacaatttcttcatgctctgca 221  Q
    |||||| ||||||||||||||||||| || |||| | |||||| ||| ||||||| ||||||||||||||||||||||| |||||||||| ||||||  |    
T  35609874 aatttctaccttcatttcaccattctgatccgaaacttcgttgccgtctccaattgagagtatccacttgccaaaattagcaatttcttcctgctctaaa 35609973  T
Q  222 ggtaccgaag 231  Q
    ||||||||||    
T  35609974 ggtaccgaag 35609983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 5828674 - 5828444
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||     
T  5828674 cgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtgacatcaaaagatttgttgtgtc 5828575  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||||||||  ||||||| |||| ||| ||||||| |||||||||||||||||||||||    
T  5828574 cgatatgagcaaatcttcaggaatttctaccttcatttcaccattctcatctgaagcgttgttgccgtctccaattcagagtatccacttgccaaaatta 5828475  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||  |||||||||||||||||||    
T  5828474 gcaatttctttctgctctgcaggtaccgaag 5828444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 21070181 - 21069951
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  21070181 cgagtattcccctttcttggaaaaatagcaggttaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtc 21070082  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| |||||||||||||||||||||| |||| |||||||| ||| ||||||| |||||||||||||| ||||||||    
T  21070081 tgatatgagcaaatcttcaggaatttctaccttcatttcaccattctcatccgaaacgtcgttgccgtctccaattgagagtatccacttgtcaaaatta 21069982  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||  |||||||||||||||||||    
T  21069981 gcaatttctttctgctctgcaggtaccgaag 21069951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 7036820 - 7037050
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  7036820 cgagtattcccctttcttggaaaagtagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtc 7036919  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| |||||| ||| ||||||| ||||||||||||||| |||||||    
T  7036920 tgatatcagcgaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaatta 7037019  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||||||||||||||||||    
T  7037020 gcaatttcttcttgctctgcaggtaccgaag 7037050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 9001264 - 9001034
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||| ||| ||||||||| |||||||||||||| ||||||||||||||||||||||     
T  9001264 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcaatcagatcgggataaacaaagtctataagagacatcaacggatttgttgtgtc 9001165  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| |   |||||| ||||||||| |||||||||||||||||||||| |||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  9001164 cgatatcaacaaatcttcaagaatttctaccttcatttcaccattctcatccgaagcatcgttgccgtatccaattgagagtatccacttgccaaaatta 9001065  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||| ||||||||||||||    
T  9001064 gcaatttcttcctgctatgcaggtaccgaag 9001034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 12786097 - 12785867
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12786097 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacagagtctataagtgacatcaacggatttgttgtgtt 12785998  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| |||||| ||| ||||||| ||||||||||||||| |||||||    
T  12785997 tgatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaatta 12785898  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| ||||||| |||||||||||    
T  12785897 gcaatttcttcctgctctgtaggtaccgaag 12785867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 12781267 - 12781037
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  12781267 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtc 12781168  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
      |||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| || ||||||| ||||||| ||||||||||||||| |||||||    
T  12781167 ttatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcattgtcgtctccaattgagagtatccacttgcaaaaatta 12781068  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||||| ||||||||||||    
T  12781067 gcaatttcttcttgctctacaggtaccgaag 12781037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22843904 - 22844129
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||| ||||||||||||     
T  22843904 cgagtattcccctttcttggaaaaatagcaggtcaccaaggttatcatttaaatcgagatacacaatgtctataagtgacatcaacagatttgttgtgtc 22844003  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
    |||||| ||  |||||| ||||||||| ||||||||||||||| |||||| ||||||| ||||| | | || |||| |||||||||| ||||||||||||    
T  22844004 agatatgagcaaatcttcaagaatttctaccttcatttcacca-tctcatccgaagcgacgttgccttctctaattaagagtatccaattgccaaaatta 22844102  T
Q  201 acaatttcttcatgctctgcaggtacc 227  Q
     |||||| ||| |||||| ||||||||    
T  22844103 gcaatttattcctgctctacaggtacc 22844129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 42232209 - 42232325
Alignment:
Q  111 taatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaattaacaatttctt 210  Q
    ||||||| | ||||||| |||||||||||||||||||||| |||| ||| |||| ||| ||||||| ||||||||||||||||||||||| |||||||||    
T  42232209 taatcttcaggaatttctaccttcatttcaccattctcatccgaaccgttgttgccgtctccaattcagagtatccacttgccaaaattagcaatttctt 42232308  T
Q  211 catgctctgcaggtacc 227  Q
      | |||||||||||||    
T  42232309 tctactctgcaggtacc 42232325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 18939139 - 18939184
Alignment:
Q  30 gggtcaccaaggttatcattcaaatcgggatacacaaagtctataa 75  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||    
T  18939139 gggttaccaaagttatcattcaaatcgggatacacaaagtttataa 18939184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0550 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0550
Description:

Target: scaffold0550; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 691 - 461
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    ||||||||||||||| |||||||| |||| ||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||||||||||     
T  691 cgagtattcccctttattggaaaaatagctggtcaccaaggttatcatttagatcgggatacacaaagtttataagtgacatcaacgggtttgttgtgtc 592  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| |||||||||||| ||||||||| ||||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  591 tgatatcagcaaatcttcaggaatttctaccttcatttcatcattctcatccgaagcgtcgttgccgtctccaattgagagtatccacttgccaaaatta 492  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||||||||||||||||||    
T  491 gcaatttcttcctgctctgcaggtaccgaag 461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 25218684 - 25218454
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  25218684 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtc 25218585  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| |||||| ||| ||||||| ||||||||||||||| |||||||    
T  25218584 tgatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaatta 25218485  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||||||||||||||||||    
T  25218484 gcaatttcttcctgctctgcaggtaccgaag 25218454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 3 - 227
Target Start/End: Complemental strand, 21113861 - 21113637
Alignment:
Q  3 agtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgttag 102  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||  |    
T  21113861 agtattccccttttttggaaaaatagcgggtcaccaaggttatcattcaaatcaagatacacaaagtctataagtgacatcaacagatttgttgtgtccg 21113762  T
Q  103 atattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaattaac 202  Q
    |||| ||  |||||| | ||||||| |||||||||||||||||||||| |||||||| |||| ||| ||||||| ||||||||||||||||||||||| |    
T  21113761 atataagcaaatcttcaggaatttctaccttcatttcaccattctcatccgaagcgttgttgccgtctccaattcagagtatccacttgccaaaattagc 21113662  T
Q  203 aatttcttcatgctctgcaggtacc 227  Q
    ||||||||  |||||||||||||||    
T  21113661 aatttctttctgctctgcaggtacc 21113637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 7821938 - 7822168
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7821938 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcggaatacacaaagtctataagtgacatcaacggatttgttgtgtt 7822037  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| |||||||||| ||||||| ||||||||||||| | ||||||     
T  7822038 tgatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgtcgtctccaattgagagtatccacttacaaaaattc 7822137  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||||| ||||||||||||    
T  7822138 gcaatttcttcctgctctacaggtaccgaag 7822168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 30307277 - 30307507
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  30307277 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcgttcagatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtc 30307376  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| || |||||||||||||| |||  |||||| |||||||||| ||||||| |||||||| |||||| |||||||    
T  30307377 cgatatcagcaaatcttcaggaatttctacattcatttcaccattgtcacccgaagcatcgttgtcgtctccaattgagagtatctacttgcaaaaatta 30307476  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     ||||||||||   |||||||||||||||||    
T  30307477 gcaatttcttcccactctgcaggtaccgaag 30307507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 25209151 - 25208936
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  |||||||||||||||||||               |||||||||||||||||||||||||||||||||||     
T  25209151 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcatt---------------aaagtctataagtgacatcaacggatttgttgtgtc 25209067  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     || || ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| |||||||||| ||||||| ||||||||||||||| |||||||    
T  25209066 tgacatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgtcgtctccaattgagagtatccacttgcaaaaatta 25208967  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
      |||||| || |||||||||||||||||||    
T  25208966 gtaatttcgtcctgctctgcaggtaccgaag 25208936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 31978646 - 31978549
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtg 98  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||    
T  31978646 cgagtattcccctttcttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaagtttataagtgacatcaacagatttgttgtg 31978549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 49055 - 48825
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49055 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacagagtctataagtgacatcaacggatttgttgtgtt 48956  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| |||||| ||| ||||||| ||||||||||||||| |||||||    
T  48955 tgatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaatta 48856  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| ||||||| |||||||||||    
T  48855 gcaatttcttcctgctctgtaggtaccgaag 48825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 13530139 - 13530369
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13530139 cgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtc 13530238  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| |   ||||||  |||||||| |||||||||||||||||||||   || ||||||||| ||| ||||||| |||||||  ||||||||||||||    
T  13530239 tgatatgaccaaatcttctagaatttctaccttcatttcaccattctcacctgatgcgtcgttgccgtctccaattgagagtatatacttgccaaaatta 13530338  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||| ||| |||||| ||||||||||||    
T  13530339 gcaatttattcctgctctacaggtaccgaag 13530369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 32871 - 33101
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  32871 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtccataagtgacatcaacggatttgttgtgtt 32970  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| | |||| ||| || |||| ||||||||||||||| |||||||    
T  32971 tgatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcattgttgccgtctctaattgagagtatccacttgcaaaaatta 33070  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||||||||||||||||||    
T  33071 gcaatttcttcctgctctgcaggtaccgaag 33101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 10110700 - 10110926
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| ||     
T  10110700 cgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctgtaagtgacatcaacagatttgttgcgtc 10110799  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| |||||||||||||||||||| | |||||||| |||| ||| ||||||| | |||||||||||||||||||||    
T  10110800 tgatatgagcaaatcttcaggaatttctaccttcatttcaccattctcctccgaagcgttgttgccgtctccaattcatagtatccacttgccaaaatta 10110899  T
Q  201 acaatttcttcatgctctgcaggtacc 227  Q
     |||||||||  ||||||| |||||||    
T  10110900 gcaatttctttctgctctgtaggtacc 10110926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 10000507 - 10000733
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||||||  |     
T  10000507 cgagtattcctctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctgtaagtgatatcaacagatttgttgcatc 10000606  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| |||||||||||||||||||| | |||||||| |||| ||| ||||||| | |||||||||||||||||||||    
T  10000607 tgatatgagcaaatcttcaggaatttctaccttcatttcaccattctcctccgaagcgttgttgccgtctccaattcatagtatccacttgccaaaatta 10000706  T
Q  201 acaatttcttcatgctctgcaggtacc 227  Q
    ||||||||||  | |||||||||||||    
T  10000707 acaatttctttctactctgcaggtacc 10000733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 50410272 - 50410498
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    ||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  50410272 cgagtattcccctttcttgaaaaaatagtgggtcgccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcagcggatttgttgtgtc 50410371  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||    |||||||||||||||||||| | ||||||||||  ||| || |||| |||||||||||||||||||||||    
T  50410372 cgatatgagaaaatcttcaggaattt----cttcatttcaccattctcatccaaagcgtcgttaccgtctctaattgagagtatccacttgccaaaatta 50410467  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||| ||| |||||| ||||||||||||    
T  50410468 gcaatttattcctgctctacaggtaccgaag 50410498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 11362359 - 11362591
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    ||||||||||| |||||||||||| ||| |||||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||| |     
T  11362359 cgagtattcccttttcttggaaaaatagtgggtcaccaatgttatcatttaaatcgggatatacaaagtctattagtgacatcaacgaatttgttgtatc 11362458  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagag--tatccacttgccaaaat 198  Q
     ||||| ||  ||||||   |||||||  ||||||||||||||||||||||||||||||||||||||| ||||||| ||||  |||||||||||||||||    
T  11362459 ggatatgagtaaatcttcgggaatttcccccttcatttcaccattctcattcgaagcgtcgttgtcgtctccaattgagagtatatccacttgccaaaat 11362558  T
Q  199 taacaatttcttcatgctctgcaggtaccgaag 231  Q
    || || ||| ||| |||||||||||| ||||||    
T  11362559 tagcagtttattcttgctctgcaggtcccgaag 11362591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 10237655 - 10237880
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| ||     
T  10237655 cgagtattcccctttcttgaaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctgtaagtgacatcaacagatttgttgcgtc 10237754  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  | |||| | ||||||| ||| | |||||||||||| | | |||||||| |||| ||| ||||||| |||||||||||||||||||||||    
T  10237755 tgatatgagcaattcttcaggaatttctaccgttatttcaccattc-cctccgaagcgttgttgccgtctccaattcagagtatccacttgccaaaatta 10237853  T
Q  201 acaatttcttcatgctctgcaggtacc 227  Q
     |||||||||  ||||| |||||||||    
T  10237854 gcaatttctttctgctcagcaggtacc 10237880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 10968900 - 10968671
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||| ||| ||||| |||| |||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  10968900 cgagtattccccttgcttagaaaaatagcaggtcacgaagtttatcattcaaatcgggatacacaaagtctataagtggcatcaacggatttgttgtgtc 10968801  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||| | |  |||||| ||||||||||||||||||||||  |||||||||||| | | ||||||| ||||| |||||||||||||||||    
T  10968800 cgatatcagcaaatc-tcagaaatttctaccttcatttcaccattctcatctgaagcgtcgttgccatctccaattgagagtgtccacttgccaaaatta 10968702  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| ||||||  |||||| ||||    
T  10968701 gcaatttcttcctgctctataggtactgaag 10968671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 10038740 - 10038960
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||          |||||||| ||||||||||||     
T  10038740 cgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaattgggatacacaaag----------acatcaacagatttgttgtgtc 10038829  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  ||||||  | |||||  |||||| |||||||||||||||   ||||||||||| ||| | ||||| |||||||||||||||||||||||    
T  10038830 tgatataagcaaatcttcgaaaatttataccttcgtttcaccattctcatctaaagcgtcgttgccgtcttcaattgagagtatccacttgccaaaatta 10038929  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| ||||||||| |||||||||    
T  10038930 gcaatttcttcttgctctgcacgtaccgaag 10038960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 11368747 - 11368969
Alignment:
Q  1 cgagtattcccctttcttggaaaatt-agcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgt 99  Q
    ||||||||||| ||||||||||||   ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  11368747 cgagtattcccttttcttggaaaaaagagcgggtcaccaatgttatcattcaaatcgggatatacaaagtctatgagtgacatcaacggatttgttgtgt 11368846  T
Q  100 tagatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatt 199  Q
      ||||| ||  ||||||   ||||||| || ||||||||||||||||||         |||||||| | ||||||| || |||||||||||||||||||    
T  11368847 cggatatgagcaaatcttcgggaatttctacattcatttcaccattctca---------tcgttgtcctctccaattgagggtatccacttgccaaaatt 11368937  T
Q  200 aacaatttcttcatgctctgcaggtaccgaag 231  Q
    | || ||||||| | |||||||||| ||||||    
T  11368938 atcagtttcttccttctctgcaggtcccgaag 11368969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 52918169 - 52918328
Alignment:
Q  4 gtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgttaga 103  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||  |     
T  52918169 gtattcccctttcttggaaaaatagcgagtcaccaaggttatcattcaaatcgggatacacgaagtctataagtggcatcaacagatttgttgtgtccgg 52918268  T
Q  104 tattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttg 164  Q
    ||   |  |||| | | ||||||| |||||||||||||||||| ||| |||||||||||||    
T  52918269 taacggcaaatc-tcaggaatttctaccttcatttcaccattcccatccgaagcgtcgttg 52918328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 46913171 - 46913245
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataa 75  Q
    ||||||||| |||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  46913171 cgagtattctcctttcttggaaaaatagcgggtcgccaaagttatcattcaaatcgggatacacaaagtctataa 46913245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 27 - 231
Target Start/End: Complemental strand, 17969 - 17765
Alignment:
Q  27 agcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgttagatattaggtaatctttaagaattt 126  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||  |||||| | ||| ||    
T  17969 agcggatcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtccgatatgagcaaatcttcaggaactt 17870  T
Q  127 caaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaattaacaatttcttcatgctctgcaggtac 226  Q
    | |||||||||||||||||||||| |||||| ||||||  || ||||||| ||||||||||||||| ||||||| |||||||||| ||||||||||||||    
T  17869 ctaccttcatttcaccattctcatccgaagcttcgttgctgtctccaattgagagtatccacttgctaaaattagcaatttcttcctgctctgcaggtac 17770  T
Q  227 cgaag 231  Q
    |||||    
T  17769 cgaag 17765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5378 - 5155
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||     
T  5378 cgagtattcccctttcttggaaaat-agcgggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtgacatcaatagatttgttgtgtc 5280  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||||||||  ||||||  |||||||| ||||| | |||||||||||||||||||||||    
T  5279 cgatatgagcaaatcttcaggaatttctaccttcatttcaccattctcatctgaagcgctgttgtcgtctccaagtcagagtatccacttgccaaaatta 5180  T
Q  201 acaatttcttcatgctctgcaggta 225  Q
     |||||||||  |||| ||||||||    
T  5179 gcaatttctttctgctttgcaggta 5155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 182911 - 183141
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    ||||||||||| ||||||||||||  || |||||||||| | ||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| |     
T  182911 cgagtattcccttttcttggaaaaagagtgggtcaccaatgatatcattcaaatcgggatatacaaagtctattagtgacatcaacgaatttgttgtatc 183010  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  ||||||   ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  183011 ggatatgagcaaatcttcgggaatttctaccttcatttcaccattctcattcgaagcgtcgttgccgtctccaattgagagtatccacttgccaaaatta 183110  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     || ||||||| |||||||||||| ||||||    
T  183111 gcagtttcttcctgctctgcaggtcccgaag 183141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 165631 - 165863
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    ||||||||||| |||||||||||| ||| |||||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||| |     
T  165631 cgagtattcccttttcttggaaaaatagtgggtcaccaatgttatcatttaaatcgggatatacaaagtctattagtgacatcaacgaatttgttgtatc 165730  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagag--tatccacttgccaaaat 198  Q
     ||||| ||  ||||||   |||||||  ||||||||||||||||||||||||||||||||||||||| ||||||| ||||  |||||||||||||||||    
T  165731 ggatatgagtaaatcttcgggaatttcccccttcatttcaccattctcattcgaagcgtcgttgtcgtctccaattgagagtatatccacttgccaaaat 165830  T
Q  199 taacaatttcttcatgctctgcaggtaccgaag 231  Q
    || || ||| ||| |||||||||||| ||||||    
T  165831 tagcagtttattcttgctctgcaggtcccgaag 165863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 321455 - 321225
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||     
T  321455 cgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacaaaaagtctataagtgacatcaacggatttgttttgtc 321356  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| | ||||||| ||||||||||||||||| |||  |||||| |  ||| ||| || |||| ||| ||||||||||| |||||||    
T  321355 cgatatcagcaaatcttcaggaatttctaccttcatttcaccattatcaaccgaagcataattgccgtctcaaattgagaatatccacttgcaaaaatta 321256  T
Q  201 acaatttcttcatgctctgcaggtaccgaag 231  Q
     |||||||||| |||||||||||||||||||    
T  321255 gcaatttcttcctgctctgcaggtaccgaag 321225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 19106 - 19329
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgtt 100  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||  |||||||||||     
T  19106 cgagtattccccttttttggaaaaatagcgggtcaccaaggttatcattcaaatcaagatacacaaagtctataagtgacatcaacatatttgttgtgtc 19205  T
Q  101 agatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaatta 200  Q
     ||||| ||  |||||| |  |||||| |||||||||||| ||||||||| |||||||| |||| ||| ||||||| | ||||||| |||||| ||||||    
T  19206 cgatatgagcaaatcttcagaaatttctaccttcatttcatcattctcatccgaagcgttgttgccgtctccaattcaaagtatccccttgcc-aaatta 19304  T
Q  201 acaatttcttcatgctctgcaggta 225  Q
     |||||||||  |||||||||||||    
T  19305 gcaatttctttctgctctgcaggta 19329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 16784 - 16882
Alignment:
Q  1 cgagtattcccctttcttggaaaattagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgt 99  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16784 cgagtattcccctttcttggaaaaatagcgggtcaccaaagttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgt 16882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 39937 - 40086
Alignment:
Q  82 tcaacggatttgttgtgttagatattaggtaatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagag 181  Q
    ||||||||||||||||||  ||||| ||  |||||| ||||||||| ||||| |||||||||||||||| |||||| |||||| | | ||||||| ||||    
T  39937 tcaacggatttgttgtgtccgatatcagcaaatcttcaagaatttctacctttatttcaccattctcatccgaagcatcgttgccatctccaattgagag 40036  T
Q  182 tatccacttgccaaaattaacaatttcttcatgctctgcaggtaccgaag 231  Q
    ||| ||||||||||| ||| |||||||||| ||||||| |||||||||||    
T  40037 tattcacttgccaaagttagcaatttcttcctgctctgtaggtaccgaag 40086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 28728 - 28612
Alignment:
Q  111 taatctttaagaatttcaaccttcatttcaccattctcattcgaagcgtcgttgtcgtatccaatttagagtatccacttgccaaaattaacaatttctt 210  Q
    ||||||| | ||||||| |||||||||||||||||||||| |||||||| ||||  || | ||||| ||||||||||||||||||||||| |||||||||    
T  28728 taatcttcaggaatttctaccttcatttcaccattctcatccgaagcgttgttgctgtcttcaattcagagtatccacttgccaaaattagcaatttctt 28629  T
Q  211 catgctctgcaggtacc 227  Q
      |||||||||||||||    
T  28628 tctgctctgcaggtacc 28612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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