View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_358 (Length: 231)
Name: NF9913A_low_358
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_358 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 12416332 - 12416555
Alignment:
| Q |
1 |
aaaaataactaccaacatatataaaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagacaattcatattccaggaattgtaggtaa |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
12416332 |
aaaaataactaccaacata----aaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagataattcatattccaggaattgtagttaa |
12416427 |
T |
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| Q |
101 |
aattctttcagaaacttggttttttgccataactgaatagtgaaatttcaccaactgccgtacagttgtagggttagcatttgaaacattctcggatttg |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12416428 |
aattctttcagaaacttggttttttgccatagctgaaaagtgaaatttcaccaactgctgtacagttgtagggtaagcatttgaaacattctcggatttg |
12416527 |
T |
|
| Q |
201 |
aaaccataatcataagaactattggatg |
228 |
Q |
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||| ||||| ||||||||||||||||| |
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| T |
12416528 |
aaatcataagaataagaactattggatg |
12416555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 12428392 - 12428615
Alignment:
| Q |
1 |
aaaaataactaccaacatatataaaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagacaattcatattccaggaattgtaggtaa |
100 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
12428392 |
aaaaataactaccaacata----aaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagataattcatattccaggaattgtagttaa |
12428487 |
T |
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| Q |
101 |
aattctttcagaaacttggttttttgccataactgaatagtgaaatttcaccaactgccgtacagttgtagggttagcatttgaaacattctcggatttg |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12428488 |
aattctttcagaaacttggttttttgccatagctgaaaagtgaaatttcaccaactgctgtacagttgtagggtaagcatttgaaacattctcggatttg |
12428587 |
T |
|
| Q |
201 |
aaaccataatcataagaactattggatg |
228 |
Q |
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||| ||||| ||||||||||||||||| |
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| T |
12428588 |
aaatcataagaataagaactattggatg |
12428615 |
T |
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