View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_362 (Length: 230)
Name: NF9913A_low_362
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_362 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
| [»] chr6 (5 HSPs) |
| |
|
| [»] scaffold0139 (1 HSPs) |
| |
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| [»] chr3 (5 HSPs) |
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| [»] scaffold0320 (1 HSPs) |
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|
| [»] scaffold0202 (1 HSPs) |
| | |
|
| [»] scaffold0909 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 21833980 - 21833751
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21833980 |
atcgattgggaggtgtacgattctacttactttagtcatatgaatttctccgacatatctagcgagagtgactgtagcgaatctgatgatagtgactgtg |
21833881 |
T |
|
| Q |
101 |
ttttattatattcaaccacaggaaatagttttggaaaataaatcgtcgctaactcccctttgaaaatggttcgtggaaagggcattcaacttgcatgtca |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
21833880 |
ttttattatattcaacctcaggaaatagtttgggaaaagaaatcgtcgctaactccccttcgaaaatggttcgtggaaagggcatccgacttgcatgtca |
21833781 |
T |
|
| Q |
201 |
tgaatccgataccgagtgtttttcagatga |
230 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |
|
|
| T |
21833780 |
tgaatccgatactgagtgtttctcagatga |
21833751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 44753541 - 44753407
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||||||| ||| || |||| ||| ||| ||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| |
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|
| T |
44753541 |
atcgattgggaggcgtatgactctagttattttggtcatatgactttctccgacatatctagcgagagtgactgtagtgaatctgatgatagtgactgta |
44753442 |
T |
|
| Q |
101 |
ttttattatattcaaccacaggaaatagttttgga |
135 |
Q |
| |
|
|||| ||||||||||| |||| ||| ||||||| |
|
|
| T |
44753441 |
ttttgctatattcaacctcaggggataattttgga |
44753407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 5010581 - 5010704
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||| | ||||| ||||| | ||| ||||||||||||| ||||||||| || ||||||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
5010581 |
atcgattggaaagtgtatgattccacttattttagtcatatgactttctccgacatttctagcgagagtggctgtagcgattctgacaatagtgattgtg |
5010680 |
T |
|
| Q |
101 |
ttttattatattcaaccacaggaa |
124 |
Q |
| |
|
||||||||||||| ||| |||||| |
|
|
| T |
5010681 |
ttttattatattcgacctcaggaa |
5010704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 25554514 - 25554392
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||| | ||||| ||||| | ||| |||||||| |||| ||||||||| || || |||||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
25554514 |
atcgattggaaagtgtatgattccacttattttagtcacatgactttctccgacatttcgagcgagagtgactgtagcgattctgacgatagtgactgtg |
25554415 |
T |
|
| Q |
101 |
ttttattatattcaaccacagga |
123 |
Q |
| |
|
|||| ||||||||||| ||||| |
|
|
| T |
25554414 |
ttttgctatattcaacctcagga |
25554392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 25559393 - 25559271
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||| | ||||| ||||| | ||| |||||||| |||| ||||||||| || || |||||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
25559393 |
atcgattggaaagtgtatgattccacttattttagtcacatgactttctccgacatttcgagcgagagtgactgtagcgattctgacgatagtgactgtg |
25559294 |
T |
|
| Q |
101 |
ttttattatattcaaccacagga |
123 |
Q |
| |
|
|||| ||||||||||| ||||| |
|
|
| T |
25559293 |
ttttgctatattcaacctcagga |
25559271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 166; Significance: 5e-89; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 16687711 - 16687482
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
16687711 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgacttatctagcgagagtgactgtagcgaatctgatgatagagactgtg |
16687612 |
T |
|
| Q |
101 |
ttttattatattcaaccacaggaaatagttttggaaaataaatcgtcgctaactcccctttgaaaatggttcgtggaaagggcattcaacttgcatgtca |
200 |
Q |
| |
|
||||||||||||||||| ||| ||||| ||| |||||| |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16687611 |
ttttattatattcaacctcagaaaataatttgggaaaagaaatcgtcgctagttccccttcgaaaatggttcgtggaaagggcattcgacttgcatgtca |
16687512 |
T |
|
| Q |
201 |
tgaatccgataccgagtgtttttcagatga |
230 |
Q |
| |
|
||||| |||||||||||| || |||||||| |
|
|
| T |
16687511 |
tgaattcgataccgagtgcttctcagatga |
16687482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 22466691 - 22466479
Alignment:
| Q |
18 |
cgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtgttttattatattcaacc |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
22466691 |
cgattctacttactttagtcatatgaatttctccgacatatctagcgagagtgactgtagcgaatatgatgatagtgactgtgttttattatattcaacc |
22466592 |
T |
|
| Q |
118 |
acaggaaatagttttggaaaataaatcgtcgctaactcccctttgaaaatggttcgtggaaagggcattcaacttgcatgtcatgaatccgataccgagt |
217 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| |||||||| |||||||||| |
|
|
| T |
22466591 |
tcaggaaatagtttgggaaaagaaatcgtcgctaactcccctttgaaaatggttcgtggaaagggaatccgacttgcatgacatgaatctgataccgagt |
22466492 |
T |
|
| Q |
218 |
gtttttcagatga |
230 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
22466491 |
gtttctcagatga |
22466479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 19012648 - 19012846
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||| |||||||||||| || ||| ||||| ||||||| |||||||||||| |||||||||||||||||||| |||| |||||||||||| |||| |
|
|
| T |
19012648 |
atcgattggaaggtgtacgattatacttattttagccatatgactttctccgatatttctagcgagagtgactgtagtgaatatgatgatagtgactgtg |
19012747 |
T |
|
| Q |
101 |
ttttattatattcaaccacaggaaatagttttggaaaataaatcgtcgctaactcccctttgaaaatggttcgtggaaagggcattcaacttgcatgtc |
199 |
Q |
| |
|
|||| ||||||||||| ||||| | | | ||| || || |||||||| ||||||| ||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
19012748 |
ttttgctatattcaacctcaggagaccctctcggacaagaagacgtcgctacttccccttcgaaaatggttcgtggaaagggtactcaacttgcatgtc |
19012846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 19020280 - 19020475
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||| ||||||||||||||| ||| ||||| ||||||| |||||||||||| |||||||||||||||||||| |||| |||||||||||| |||| |
|
|
| T |
19020280 |
atcgattggaaggtgtacgattctacttattttagccatatgactttctccgatatttctagcgagagtgactgtagtgaatatgatgatagtgactgtg |
19020379 |
T |
|
| Q |
101 |
ttttattatattcaaccacaggaaatagttttggaaaataaatcgtcgctaactcccctttgaaaatggttcgtggaaagggcattcaacttgcat |
196 |
Q |
| |
|
|||| ||||||||||| ||||| | | | ||| || | |||||| | ||||||| ||||||||||||||||||||| | ||| ||||||| |
|
|
| T |
19020380 |
ttttgctatattcaacctcaggagaccctctcggacaaggagacgtcgcgacttccccttcgaaaatggttcgtggaaagggtactcagcttgcat |
19020475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 20091510 - 20091607
Alignment:
| Q |
7 |
tgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtgtttt |
104 |
Q |
| |
|
||||||||||||||||| | ||| ||| |||| |||| ||||||| |||||||||||||||| || |||||||||||||| ||||||||||||||||| |
|
|
| T |
20091510 |
tgggaggtgtacgattccagttattttggtcacatgactttctccaatatatctagcgagagcgattgtagcgaatctgaagatagtgattgtgtttt |
20091607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0139 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0139
Description:
Target: scaffold0139; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 3747 - 3976
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
3747 |
atcgattgggaggtgtatgattctagttactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtaactgtg |
3846 |
T |
|
| Q |
101 |
ttttattatattcaaccacaggaaatagttttggaaaataaatcgtcgctaactcccctttgaaaatggttcgtggaaagggcattcaacttgcatgtca |
200 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| |||| ||||||| || ||| ||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
3847 |
ttttattatattcaacctcaggagatagttttggaaaagaaattgtcgctatttcttcttcgaaaatggttcgtggaaagggtattcagcttgcatgtca |
3946 |
T |
|
| Q |
201 |
tgaatccgataccgagtgtttttcagatga |
230 |
Q |
| |
|
||||| |||||||| |||||||||||||| |
|
|
| T |
3947 |
ggaatctgataccgaatgtttttcagatga |
3976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 23523272 - 23523498
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
23523272 |
atcgattggaaggtgtacgattctagttactttagtcatatgaatttctccgatatatctagcgagagtgactgtagaaaatctgatgatagtgactgtg |
23523371 |
T |
|
| Q |
101 |
ttttattatattcaaccacaggaaatagttttggaaaataaatcgtcgctaactcccctttgaaaatggttcgtggaaagggcattcaacttgcatgtca |
200 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| ||||||||| || |||| ||| ||||||||||||||||||| | || || ||||||||||| |
|
|
| T |
23523372 |
ttttattatattcaacctcaggagatagttttggaaaagaaatcgtcgatatctcctcttcgaaaatggttcgtggaaagagtatccagcttgcatgtca |
23523471 |
T |
|
| Q |
201 |
tgaatccgataccgagtgtttttcaga |
227 |
Q |
| |
|
|||| |||| |||| ||||||||||| |
|
|
| T |
23523472 |
ggaattcgatgccgaatgtttttcaga |
23523498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11543839 - 11543613
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||| | ||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11543839 |
atcgattggaaagtgtatgattctacttattttagtcatatgaatttctccgatatatctagcgagagtgactgtagcaaatctgatgatagtgattgtg |
11543740 |
T |
|
| Q |
101 |
ttttattatattcaaccacaggaaatagttttggaaaataaatcgtcgctaactcccctttgaaaatggttcgtggaaagggcattcaacttgcatgtca |
200 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| ||||||||| || |||| ||| ||| ||||||| ||||||| | | || ||||||||||| |
|
|
| T |
11543739 |
ttttattatattcaacctcaggagatagttttggaaaagaaatcgtcgatatctcctcttcgaatatggttcctggaaagagtacccagcttgcatgtca |
11543640 |
T |
|
| Q |
201 |
tgaatccgataccgagtgtttttcaga |
227 |
Q |
| |
|
||||| || ||||| ||||||||||| |
|
|
| T |
11543639 |
ggaatctgacaccgaatgtttttcaga |
11543613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 12530251 - 12530363
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||| | ||||| ||||| | ||| ||||||||||||| ||||||||| || ||||||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
12530251 |
atcgattggaaagtgtatgattccacttattttagtcatatgactttctccgacatttctagcgagagtggctgtagcgattctgacaatagtgattgtg |
12530350 |
T |
|
| Q |
101 |
ttttattatattc |
113 |
Q |
| |
|
||||||||||||| |
|
|
| T |
12530351 |
ttttattatattc |
12530363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 95568 - 95797
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||| | ||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
95568 |
atcgattggaaagtgtatgattctacttattttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
95667 |
T |
|
| Q |
101 |
ttttattatattcaaccacaggaaatagttttggaaaataaatcgtcgctaactcccctttgaaaatggttcgtggaaagggcattcaacttgcatgtca |
200 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||| ||||||||| || |||| ||||||| ||||||||||||||| | | || ||||||||||| |
|
|
| T |
95668 |
ttttattatattcaacctcaggagataattttggaaaagaaatcgtcgatatctcctctttgaatatggttcgtggaaagagtgtccagcttgcatgtca |
95767 |
T |
|
| Q |
201 |
tgaatccgataccgagtgtttttcagatga |
230 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |
|
|
| T |
95768 |
ggaatccgacaccgaatgtttttcagatga |
95797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 14561860 - 14562089
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14561860 |
atcgattgggaagtgtatgattctacttactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatattgattgtg |
14561959 |
T |
|
| Q |
101 |
ttttattatattcaaccacaggaaatagttttggaaaataaatcgtcgctaactcccctttgaaaatggttcgtggaaagggcattcaacttgcatgtca |
200 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||||| ||||||| | || |||| ||| ||| |||||| |||||||| || | || | ||| ||||| |
|
|
| T |
14561960 |
ttttaatatattcaaccccaggagatagttttggaaaagaaatcgttgatatctcctcttcgaatatggtttgtggaaagagcgtccagcgtgcctgtca |
14562059 |
T |
|
| Q |
201 |
tgaatccgataccgagtgtttttcagatga |
230 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |
|
|
| T |
14562060 |
ggaatccgacaccgaatgtttttcagatga |
14562089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 5194688 - 5194459
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||| |||| |
|
|
| T |
5194688 |
atcgattgggaggtgtacgattctacttactttagtcatatgaatttctccgatttatctagcgagagtgattttagcgaatctgatgatagtgactgtg |
5194589 |
T |
|
| Q |
101 |
ttttattatattcaaccacaggaaatagttttggaaaataaatcgtcgctaactcccctttgaaaatggttcgtggaaagggcattcaacttgcatgtca |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || ||| ||| || ||||| || |||||||||||||||| ||||| ||||||| ||| |||||| |
|
|
| T |
5194588 |
ttttattatattcaacctcaggaaatagtttggggaaagaaaacgacgctagttcttctttgaaaatggttcgaggaaaaggcattcgtctttcatgtcc |
5194489 |
T |
|
| Q |
201 |
tgaatccgataccgagtgtttttcagatga |
230 |
Q |
| |
|
|||||||||||||| || || |||||||| |
|
|
| T |
5194488 |
cgaatccgataccgaatgcttctcagatga |
5194459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 16090953 - 16090818
Alignment:
| Q |
13 |
gtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtgttttattatatt |
112 |
Q |
| |
|
||||| ||||| | ||| ||||||||||||| ||||||| | || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
16090953 |
gtgtatgattccacttattttagtcatatgactttctccaacatttctagcgagagtgactgtagcgattctgacaatagtgattgtgttttattatata |
16090854 |
T |
|
| Q |
113 |
caaccacaggaaatagttttggaaaataaatcgtcg |
148 |
Q |
| |
|
| ||| ||||| | |||| ||||||| ||||||||| |
|
|
| T |
16090853 |
cgaccccaggagaaagttgtggaaaagaaatcgtcg |
16090818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 14432617 - 14432550
Alignment:
| Q |
46 |
ttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtgttttattatattc |
113 |
Q |
| |
|
|||||||||||||||||| |||| || |||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
14432617 |
ttctccgatatatctagcaagagcgattgtagcgaatctgacgatagtgattgtgttttgctatattc |
14432550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 20502561 - 20502363
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||||| ||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
20502561 |
atcgattgggaggcgtatgattctagttactttggtcatatgactttctccgatatatctagtgagagcgactgtagtgaatctgatgatagtgactgtg |
20502462 |
T |
|
| Q |
101 |
ttttattatattcaaccacaggaaatagttttggaaaataaatcgtcgctaactcccctttgaaaatggttcgtggaaagggcattcaacttgcatgtc |
199 |
Q |
| |
|
||||| ||||||||||| ||| | ||| || ||||||| || | ||||||| ||||||| ||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
20502461 |
ttttactatattcaacctcagaagataattctggaaaagaagttgtcgctatttccccttctaaaatggttcgcggaaaaggtattcaacttgcatgtc |
20502363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 11178 - 10949
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||||| |||| |||||||||||| | || |
|
|
| T |
11178 |
atcgattgggaggcgtatgattctagttactttggtcatatgattttctctgatatatctagcgagagtgactgtagtgaatatgatgatagtgactatg |
11079 |
T |
|
| Q |
101 |
ttttattatattcaaccacaggaaatagttttggaaaataaatcgtcgctaactcccctttgaaaatggttcgtggaaagggcattcaacttgcatgtca |
200 |
Q |
| |
|
||||| ||||||| | ||||| ||| |||||||||| ||| ||||||| | |||| ||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
11078 |
ttttagtatattctttctcaggagataattttggaaaagaaaatgtcgctattcctccttcgaaaatggttcgtggaaagggtattcagcttgcatgtcc |
10979 |
T |
|
| Q |
201 |
tgaatccgataccgagtgtttttcagatga |
230 |
Q |
| |
|
||||| || || || |||||||||||||| |
|
|
| T |
10978 |
ggaatcagacactgaatgtttttcagatga |
10949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 20436244 - 20436440
Alignment:
| Q |
13 |
gtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtgttttattatatt |
112 |
Q |
| |
|
||||||||||| | ||| ||||| ||||||| ||||||||| || ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
20436244 |
gtgtacgattccacttattttagccatatgactttctccgacatttctagcgagagcgactgtagcgattctgacaatagtgattgtgttttattatatt |
20436343 |
T |
|
| Q |
113 |
caaccacaggaaatagttttggaaaataaatcgtcgctaactcccctttgaaaatggttcgtggaaagggcattcaacttgcatgtcatgaatccga |
209 |
Q |
| |
|
||| | ||||| |||||||||||||| ||||||||| |||| ||| |||||||||||||||||| | | |||||||||||||| ||| |||| |
|
|
| T |
20436344 |
caaacccaggagatagttttggaaaagaaatcgtcgaggtctcctcttcaaaaatggttcgtggaaagagtacccaacttgcatgtcaggaaaccga |
20436440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 547037 - 547159
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||| | ||||| ||||| | ||| |||||||| |||| ||||||||| || || |||||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
547037 |
atcgattggaaagtgtatgattccacttattttagtcacatgactttctccgacatttcgagcgagagtgactgtagcgattctgacgatagtgactgtg |
547136 |
T |
|
| Q |
101 |
ttttattatattcaaccacagga |
123 |
Q |
| |
|
|||| ||||||||||| ||||| |
|
|
| T |
547137 |
ttttgctatattcaacctcagga |
547159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 12099553 - 12099675
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||| | ||||| ||||| | ||| |||||||| |||| ||||||||| || || |||||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
12099553 |
atcgattggaaagtgtatgattccacttattttagtcacatgactttctccgacatttcgagcgagagtgactgtagcgattctgacgatagtgactgtg |
12099652 |
T |
|
| Q |
101 |
ttttattatattcaaccacagga |
123 |
Q |
| |
|
|||| ||||||||||| ||||| |
|
|
| T |
12099653 |
ttttgctatattcaacctcagga |
12099675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 11365 - 11487
Alignment:
| Q |
1 |
atcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtg |
100 |
Q |
| |
|
||||||||| ||||||||||||| | ||| ||||| ||||||| |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
11365 |
atcgattggaaggtgtacgattccacttattttagccatatgactttctccgatatttctagcgagagtgattgtagtgaatctgatgatagtgattgtg |
11464 |
T |
|
| Q |
101 |
ttttattatattcaaccacagga |
123 |
Q |
| |
|
|||| ||||||||||| ||||| |
|
|
| T |
11465 |
ttttgctatattcaacctcagga |
11487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0909 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0909
Description:
Target: scaffold0909; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 4280 - 4174
Alignment:
| Q |
7 |
tgggaggtgtacgattctaattactttagtcatatgaatttctccgatatatctagcgagagtgactgtagcgaatctgatgatagtgattgtgttttat |
106 |
Q |
| |
|
||||||||||||||||||| |||||| |||| |||| |||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||| |
|
|
| T |
4280 |
tgggaggtgtacgattctagttacttcggtcacatgactttctccgatatatctagcgagagcgattgtagtgaatctgacgatagtgattgtgttttgc |
4181 |
T |
|
| Q |
107 |
tatattc |
113 |
Q |
| |
|
||||||| |
|
|
| T |
4180 |
tatattc |
4174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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