View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_367 (Length: 230)
Name: NF9913A_low_367
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_367 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 30455441 - 30455669
Alignment:
| Q |
2 |
ttggatcaaaggttcctcctatgagtgttgaatattcttctacatatccttttaggggctttccatcaatatggaaaccggatgtggtatcctcaagttc |
101 |
Q |
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| T |
30455441 |
ttggatcaaaggttcctcctatgagtgttgaatattcttctacatatccttttaggggctttccatcaatatggaaactggatgtggtatcctcaagttc |
30455540 |
T |
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| Q |
102 |
agtactaatggccagttgggttccaaattcagtccgaatgtttgagaaggttatgagcaattatatagtaccttcaacaatgacttgtgctgatattctg |
201 |
Q |
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| T |
30455541 |
attactaatggccagttgggttccaaattcagtccgaatgtttgagaaggttatgagcaattatatagtaccttcaacaatgacttgtgctgatattgtg |
30455640 |
T |
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| Q |
202 |
gttatttatgttgcctgctttattattga |
230 |
Q |
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| T |
30455641 |
gttatttatgttgccttctttattattga |
30455669 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 24735106 - 24735190
Alignment:
| Q |
6 |
atcaaaggttcctcctatgagtgttgaatattcttctacatatccttttaggggctttccatcaatatggaaaccggatgtggta |
90 |
Q |
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||||||| || ||| || ||| ||||||||| |||||||||||||||| |||| | ||||||||||| ||| | |||| ||||| |
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| T |
24735106 |
atcaaagcttgctcatacgagggttgaatatcattctacatatcctttttgggggtgtccatcaatattgaagctggatatggta |
24735190 |
T |
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