View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_368 (Length: 230)
Name: NF9913A_low_368
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_368 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 26179531 - 26179727
Alignment:
| Q |
21 |
atcataagcattgacctagaaaaggaaacaaattaaactagttttgaagctgaaccaacttaagaatatattattataattttcagcaacaatttcaact |
120 |
Q |
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| T |
26179531 |
atcataagcattgacctagaaaaagaaacaaattaaactagttttgaagctgaaccaacttaagaatatattattataattttcagcaaaaatttcaact |
26179630 |
T |
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| Q |
121 |
tcttctgagctaaatggctcaaactattactgttgtcgcaaactacatcaaattctaaataagacagttccatctctgtcacacataacaccaaact |
217 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
26179631 |
tcttctgagctaaatggctcaaactattactgctgtcgcaaactacatcaaattctaaataagacagttccatctctgtcacacatagctccaaact |
26179727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 120296 - 120437
Alignment:
| Q |
21 |
atcataagcattgacctagaaaaggaaacaaattaaactagttttgaagctgaaccaacttaagaatatattattataattttcagcaacaa-tttcaac |
119 |
Q |
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||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| | || || |||||||||||| || |||||| |
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| T |
120296 |
atcataaccattgacctagaaaaagaaacaaataaaactagttttgaagctgaaccaacttaagaatagactaataaaattttcagcaaaaactttcaaa |
120395 |
T |
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| Q |
120 |
ttcttctgagctaaatggctcaaactattactgttgtcgcaa |
161 |
Q |
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| T |
120396 |
ttcttctgaggtaaatggctcaaactattactgctgtcgcaa |
120437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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