View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_375 (Length: 230)
Name: NF9913A_low_375
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_375 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 28497986 - 28497769
Alignment:
| Q |
1 |
tcaaacaagttcttggagtaattgaacgggactaacagtggctgaagtgttgtcacggcagctaacatcagaaaacagagaggctaagggagtataaatt |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
28497986 |
tcaaacaagttcttggagtaattgaacggggctaacagtggctgaagtgttgtcacggcagct------------cagagaggctaaggtagtataaatt |
28497899 |
T |
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| Q |
101 |
ataatactaaacaagtgccagataacatcagaaagcaaacataggttggatagctccaattcacttaggtgcttgcaccagatgacttggttatggcccc |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28497898 |
ataatactcaacaagtgccagataacatcagaaagcaaacataggttggatagctccaattcacttaggtgcttgcaccagatgacttgggtatggcccc |
28497799 |
T |
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| Q |
201 |
acttaaagttcaagtggtaaattactgttg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28497798 |
acttaaagttcaagtggtaaattactgttg |
28497769 |
T |
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