View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_376 (Length: 230)
Name: NF9913A_low_376
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_376 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 23210843 - 23211072
Alignment:
| Q |
1 |
tcacatcttaacctaaatcttaagacattgagttatgagtcttataacttatatagtgttcaacatccattttttcatctaatatgagacttctgcgcac |
100 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23210843 |
tcacatcttaacctaaatcttaagacattgagttacgggtcttataacttatatagtgttcaacatccattttttcatctaatatgagacttctgcgtac |
23210942 |
T |
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| Q |
101 |
acttgttacataataatctctcatccatccattcatatgtgtacatgctcctcctcaattggccgcactaaacatgacacattgccctaccattattgtt |
200 |
Q |
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| T |
23210943 |
acttgttacataataacctctcatccatccattcatatgtgtacatgctcctcctcaattggccgcactaaacatgacacattgccctaccattattgtt |
23211042 |
T |
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| Q |
201 |
aggaagacttccggcataatgagtcattcg |
230 |
Q |
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| T |
23211043 |
aggaagacttccggcataatgagtcattcg |
23211072 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 38259343 - 38259380
Alignment:
| Q |
57 |
tgttcaacatccattttttcatctaatatgagacttct |
94 |
Q |
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| T |
38259343 |
tgttcaacatctattttttcatctaatatgagacttct |
38259380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 31503515 - 31503547
Alignment:
| Q |
49 |
ttatatagtgttcaacatccattttttcatcta |
81 |
Q |
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| T |
31503515 |
ttatatagtgttcaacatccattttctcatcta |
31503547 |
T |
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