View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_377 (Length: 230)

Name: NF9913A_low_377
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_377
NF9913A_low_377
[»] chr7 (6 HSPs)
chr7 (96-229)||(13915725-13915858)
chr7 (101-229)||(17316680-17316809)
chr7 (96-171)||(17320944-17321020)
chr7 (101-171)||(17321020-17321091)
chr7 (101-153)||(17321091-17321144)
chr7 (135-171)||(17316644-17316680)
[»] chr2 (1 HSPs)
chr2 (96-229)||(29066601-29066734)
[»] chr6 (3 HSPs)
chr6 (101-229)||(24021988-24022117)
chr6 (96-171)||(24021841-24021917)
chr6 (101-171)||(24021917-24021988)
[»] chr5 (2 HSPs)
chr5 (101-229)||(22282842-22282971)
chr5 (121-171)||(22282971-22283022)
[»] chr8 (1 HSPs)
chr8 (107-229)||(16536728-16536851)
[»] scaffold0031 (3 HSPs)
scaffold0031 (96-171)||(84716-84792)
scaffold0031 (101-171)||(84645-84716)
scaffold0031 (101-153)||(84592-84645)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 13915858 - 13915725
Alignment:
Q  96 gatagcacatacatttgccttttgaatgcttttcatgttgcatgcatatgtctttcaacttcaatctcagagattccataaattggatgctccctcactc 195  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13915858 gatagcacatacatttgccctttgaatgcttttcatgttgcatgcatatgtctttcaacttcaatctcagagattccataaattggatgctccctcactc 13915759  T
Q  196 aaccaattttttaacaaacactaccccacatgtg 229  Q
    |||||||||||||||| |||||||||||||||||    
T  13915758 aaccaattttttaacagacactaccccacatgtg 13915725  T

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Target: chr7; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 101 - 229
Target Start/End: Original strand, 17316680 - 17316809
Alignment:
Q  101 cacatacatttgccttttgaatgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattccataaattggatgctccctcactcaacc 199  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  17316680 cacattcatttgctttttgaatgcttttcatgttggcatgcatatgtctttcaacttcaatctcagagattccctaaattggatggtccctcactcaacc 17316779  T
Q  200 aattttttaacaaacactaccccacatgtg 229  Q
    |||||||||||||||| |||||||||||||    
T  17316780 aattttttaacaaacagtaccccacatgtg 17316809  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 17320944 - 17321020
Alignment:
Q  96 gatagcacatacatttgccttttgaatgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattc 171  Q
    |||||||||| ||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17320944 gatagcacattcatttgctttttcaatgcttttcatgttggcatgcatatgtctttcaacttcaatctcagagattc 17321020  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 17321020 - 17321091
Alignment:
Q  101 cacatacatttgccttttgaatgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattc 171  Q
    ||||| ||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  17321020 cacattcatttgctttttgaatgcttttgatgttggcatgcatatgtctttcaacttcaatctcagagattc 17321091  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 17321091 - 17321144
Alignment:
Q  101 cacatacatttgccttttgaatgcttttcatgtt-gcatgcatatgtctttcaa 153  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||||||||||||    
T  17321091 cacattcatttgctttttgaatgcttttcatgttggcatgcatatgtctttcaa 17321144  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 17316644 - 17316680
Alignment:
Q  135 gcatgcatatgtctttcaacttcaatctcagagattc 171  Q
    |||||||||||||||||||||||||||||||||||||    
T  17316644 gcatgcatatgtctttcaacttcaatctcagagattc 17316680  T

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Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 29066734 - 29066601
Alignment:
Q  96 gatagcacatacatttgccttttgaatgcttttcatgttgcatgcatatgtctttcaacttcaatctcagagattccataaattggatgctccctcactc 195  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  29066734 gataggacatacatttgccttttgaatgctttttatgttgcatgcatatgtctttcaacttcaatcttagagattccataaattggatactccctcactc 29066635  T
Q  196 aaccaattttttaacaaacactaccccacatgtg 229  Q
    || |||||||||||||||||||||||||||||||    
T  29066634 aatcaattttttaacaaacactaccccacatgtg 29066601  T

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Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 101 - 229
Target Start/End: Original strand, 24021988 - 24022117
Alignment:
Q  101 cacatacatttgccttttgaatgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattccataaattggatgctccctcactcaacc 199  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  24021988 cacattcatttgctttttgaatgcttttcatgttggcatgcatatgtctttcaacttcaatctcagagattccctaaattggatggtccctcactcaacc 24022087  T
Q  200 aattttttaacaaacactaccccacatgtg 229  Q
    |||||||||||||||| |||||||||||||    
T  24022088 aattttttaacaaacagtaccccacatgtg 24022117  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 24021841 - 24021917
Alignment:
Q  96 gatagcacatacatttgccttttgaatgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattc 171  Q
    |||||||||| ||||||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  24021841 gatagcacattcatttgctttttgaatacttttcatgttggcatgcatgtgtctttcaacttcaatctcagagattc 24021917  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 24021917 - 24021988
Alignment:
Q  101 cacatacatttgccttttgaatgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattc 171  Q
    ||||| ||||||| |||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||    
T  24021917 cacattcatttgctttttgaatgcttttgatgttggcatgcatatgtctttcaagttcaatctcagagattc 24021988  T

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Target: chr5 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 22282971 - 22282842
Alignment:
Q  101 cacatacatttgccttttgaatgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattccataaattggatgctccctcactcaacc 199  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  22282971 cacattcatttgctttttgaatgcttttcatgttggcatgcatatgtctttcaacttcaatctcagagattccctaaattggatggtccctcactcaacc 22282872  T
Q  200 aattttttaacaaacactaccccacatgtg 229  Q
    |||||||||||||||| |||||||||||||    
T  22282871 aattttttaacaaacagtaccccacatgtg 22282842  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 22283022 - 22282971
Alignment:
Q  121 atgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattc 171  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22283022 atgcttttcatgttggcatgcatatgtctttcaacttcaatctcagagattc 22282971  T

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Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 107 - 229
Target Start/End: Complemental strand, 16536851 - 16536728
Alignment:
Q  107 catttgccttttgaatgcttttcatgtt-gcatgcatatgtctttcaacttcaatctcagagattccataaattggatgctccctcactcaaccaatttt 205  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  16536851 catttgctttttgaatgcttttcatgttagcatgcatatgtctttcaacttcaatctcagagattccataaattggatggtccttcactcaaccaatttt 16536752  T
Q  206 ttaacaaacactaccccacatgtg 229  Q
    |||||||||||||| |||||||||    
T  16536751 ttaacaaacactacaccacatgtg 16536728  T

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Target: scaffold0031 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 84792 - 84716
Alignment:
Q  96 gatagcacatacatttgccttttgaatgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattc 171  Q
    |||||||||| ||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  84792 gatagcacattcatttgctttttcaatgcttttcatgttggcatgcatatgtctttcaacttcaatctcagagattc 84716  T

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Target: scaffold0031; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 84716 - 84645
Alignment:
Q  101 cacatacatttgccttttgaatgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattc 171  Q
    ||||| ||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  84716 cacattcatttgctttttgaatgcttttgatgttggcatgcatatgtctttcaacttcaatctcagagattc 84645  T

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Target: scaffold0031; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 84645 - 84592
Alignment:
Q  101 cacatacatttgccttttgaatgcttttcatgtt-gcatgcatatgtctttcaa 153  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||||||||||||    
T  84645 cacattcatttgctttttgaatgcttttcatgttggcatgcatatgtctttcaa 84592  T

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