View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_382 (Length: 230)
Name: NF9913A_low_382
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_382 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 16027741 - 16027503
Alignment:
| Q |
1 |
aggtcttggtctcaaattatgttggaagtttcttaaatatg--------tgagata-tttccttagattaagggtgactaaaaattatggttttcataaa |
91 |
Q |
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| T |
16027741 |
aggtcttggtctcaaattatgttggaagtttcttaaatatgataatgaatgagatagtttccttagattaagggtgactaaaaataatggtttttataaa |
16027642 |
T |
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| Q |
92 |
ccacacaatatttattcttctatttgtgaggtatcaaatgtaaaatcttagttgttcacgacaactctagatgacatttgggtgatggaaagactatcaa |
191 |
Q |
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| T |
16027641 |
ccacacaatatttattcttctatttgtgaggtatcaaatgtaaaatcttagttgttcacgacagctctagatgacagttgggtgatggaaagactatcaa |
16027542 |
T |
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| Q |
192 |
tttcttgttagataattggcattgtgaacctttagttga |
230 |
Q |
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| T |
16027541 |
attcttgtttgataattggcattgtgaacctttagttga |
16027503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 14608182 - 14608144
Alignment:
| Q |
192 |
tttcttgttagataattggcattgtgaacctttagttga |
230 |
Q |
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| T |
14608182 |
tttcttgttagataattggcattgtgaacctttagttga |
14608144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 14608210 - 14608177
Alignment:
| Q |
1 |
aggtcttggtctcaaattatgttggaagtttctt |
34 |
Q |
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| T |
14608210 |
aggtctttgtctcaaattatgttggaagtttctt |
14608177 |
T |
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