View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_384 (Length: 229)
Name: NF9913A_low_384
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_384 |
 | |
|
| [»] scaffold1075 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold1075 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 2769 - 2541
Alignment:
| Q |
1 |
agaccatgttgatgctcgtagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccggcaatttttactttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2769 |
agaccatgttgatgctcgtagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccggcaatttttactttg |
2670 |
T |
|
| Q |
101 |
actggtaaaagtaagagggaatttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttccagatgcattgacttagaagctc |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2669 |
actggtaaaagtaagagggattttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcattgacttagaagctc |
2570 |
T |
|
| Q |
201 |
ttaagttgaaaggaacgttgaagagtcat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2569 |
ttaagttgaaaggaacgttgaagagtcat |
2541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 17006328 - 17006556
Alignment:
| Q |
1 |
agaccatgttgatgctcgtagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccggcaatttttactttg |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17006328 |
agaccatgttgatgctcgaagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccgacaatttttactttg |
17006427 |
T |
|
| Q |
101 |
actggtaaaagtaagagggaatttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttccagatgcattgacttagaagctc |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
17006428 |
actggtaaatgtaagagggaatttttaacaattttaaagaatatcacagtgccggatggttattcaagcaacatttctagatgcattgacttggaagctc |
17006527 |
T |
|
| Q |
201 |
ttaagttgaaaggaacgttgaagagtcat |
229 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
17006528 |
ttaagttgaaaggaatgttgaagagtcat |
17006556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University