View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_385 (Length: 229)

Name: NF9913A_low_385
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_385
NF9913A_low_385
[»] chr6 (9 HSPs)
chr6 (27-200)||(28097222-28097395)
chr6 (38-153)||(29827263-29827378)
chr6 (125-191)||(28186633-28186699)
chr6 (128-191)||(28326717-28326780)
chr6 (128-191)||(28504353-28504416)
chr6 (41-171)||(27697379-27697509)
chr6 (125-191)||(28296617-28296683)
chr6 (125-191)||(28515390-28515456)
chr6 (41-153)||(29842785-29842897)
[»] chr2 (1 HSPs)
chr2 (41-200)||(3280889-3281048)
[»] chr5 (1 HSPs)
chr5 (27-191)||(16692106-16692270)
[»] scaffold0019 (1 HSPs)
scaffold0019 (27-189)||(57073-57235)
[»] chr8 (1 HSPs)
chr8 (27-162)||(31906322-31906457)
[»] chr4 (1 HSPs)
chr4 (70-191)||(5089772-5089893)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 28097222 - 28097395
Alignment:
Q  27 aaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaatt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097222 aaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaatt 28097321  T
Q  127 ccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagaataat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28097322 ccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataat 28097395  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 153
Target Start/End: Complemental strand, 29827378 - 29827263
Alignment:
Q  38 tcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttcta 137  Q
    |||||||||||||||||||||||||| |    |||||| ||||| ||||||| | ||||||| |||||||||| ||| || | ||| |||||||||||||    
T  29827378 tcatcttcctccaaagcatcaaaacttattttaagtatattttggatctctttattaggaatcctttcatatctatctaatatagatttccattcttcta 29827279  T
Q  138 tatgctttccatacaa 153  Q
    ||| ||||||| ||||    
T  29827278 tattctttccaaacaa 29827263  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 28186699 - 28186633
Alignment:
Q  125 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 191  Q
    ||||||||| |||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28186699 ttccattctcctatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28186633  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 28326780 - 28326717
Alignment:
Q  128 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 191  Q
    |||||| |||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28326780 cattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28326717  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 28504416 - 28504353
Alignment:
Q  128 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 191  Q
    |||||| |||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28504416 cattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28504353  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 171
Target Start/End: Original strand, 27697379 - 27697509
Alignment:
Q  41 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 140  Q
    ||||| |||||||||||| | ||||| | |||||| ||||| ||||||| | | ||||| || ||||| | ||| || | | | |||||||||||||| |    
T  27697379 tcttcttccaaagcatcatagctcactctaagtatcttttggatctctttattgggaatcctgtcatacccatctaatatatacttccattcttctatgt 27697478  T
Q  141 gctttccatacaagttggaacctaatatttc 171  Q
     ||||||| ||||||| ||||| | ||||||    
T  27697479 tctttccaaacaagttagaacccactatttc 27697509  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 28296617 - 28296683
Alignment:
Q  125 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 191  Q
    |||||||||  ||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28296617 ttccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28296683  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 28515456 - 28515390
Alignment:
Q  125 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 191  Q
    |||||||||  ||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28515456 ttccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28515390  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 29842785 - 29842897
Alignment:
Q  41 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 140  Q
    |||||||||||||||||||| || |    |||||| || || ||||||| | ||||||| |||||||| | ||| ||   ||| ||||||||||||||||    
T  29842785 tcttcctccaaagcatcaaagcttattttaagtatattgtggatctctttattaggaatcctttcatacctatctaatgtagatttccattcttctatat 29842884  T
Q  141 gctttccatacaa 153  Q
     ||||||| ||||    
T  29842885 tctttccaaacaa 29842897  T

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Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 3281048 - 3280889
Alignment:
Q  41 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 140  Q
    ||||||||||||||||||||||||||   |||||| || |||||||||| | ||||||| ||||||||||||||||||||||||||||| |||| |||||    
T  3281048 tcttcctccaaagcatcaaaactcactttaagtatcttctgaatctctttattaggaatcctttcatatcgatccaacaaagaattccactcttttatat 3280949  T
Q  141 gctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagaataat 200  Q
     ||||||| |||||||||||||||||| ||| || |||||||||||||||| || |||||    
T  3280948 tctttccaaacaagttggaacctaatacttctaatgccaatggaaggccagaagcataat 3280889  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 191
Target Start/End: Complemental strand, 16692270 - 16692106
Alignment:
Q  27 aaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaatt 126  Q
    |||||||| | |||||||||||||||  ||||||||| ||   ||||||||| |||||   || || |||||| | |||||||||||| ||   ||| ||    
T  16692270 aaacactcttttcatcttcctccaaactatcaaaacttactttaagtattttgtgaattcgtttaccaggaatccattcatatcgatcaaatgtagattt 16692171  T
Q  127 ccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 191  Q
    |||||||||||||| ||||||| ||||||| || |||| || ||| || || |||||||||||||    
T  16692170 ccattcttctatattctttccaaacaagttagatcctactacttctaaagctaatggaaggccag 16692106  T

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Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 189
Target Start/End: Original strand, 57073 - 57235
Alignment:
Q  27 aaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaatt 126  Q
    ||||| || ||||||||||||||||||||||||| || ||   |||||| | ||| |||| || | | ||||| ||||||||  |||  ||   ||| ||    
T  57073 aaacattcttctcatcttcctccaaagcatcaaagcttactttaagtatctcttggatctttttaatgggaatcctttcatactgatttaatgcagattt 57172  T
Q  127 ccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggcc 189  Q
    ||||||| |||||| ||||||| ||||||| ||||| | || ||| |||||||||||||||||    
T  57173 ccattctcctatattctttccaaacaagttcgaacccactacttctaaggccaatggaaggcc 57235  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 31906457 - 31906322
Alignment:
Q  27 aaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaatt 126  Q
    |||||||  |||||||||||||||||||||||||||| ||    ||||| ||||| ||||||| | | |||||  ||||||||||||  ||   ||| |     
T  31906457 aaacacttttctcatcttcctccaaagcatcaaaacttactttgagtatattttggatctctttatttggaatgatttcatatcgatgtaatgcagattc 31906358  T
Q  127 ccattcttctatatgctttccatacaagttggaacc 162  Q
    |||||||| ||||| ||||||| | || ||||||||    
T  31906357 ccattcttgtatattctttccaaataaattggaacc 31906322  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 5089772 - 5089893
Alignment:
Q  70 aagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttccatacaagttggaacctaatatt 169  Q
    |||||| ||||| || |||| | ||||||| ||||||||   ||| |  ||||| ||||||| |||||||| ||||||| |||| |||||||| |  | |    
T  5089772 aagtatcttttggatttctttattaggaatcctttcatactcatctagtaaagatttccatttttctatatcctttccaaacaaattggaacccacaact 5089871  T
Q  170 tccaaggccaatggaaggccag 191  Q
    || || ||||||||||||||||    
T  5089872 tctaaagccaatggaaggccag 5089893  T

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