View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_388 (Length: 229)

Name: NF9913A_low_388
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_388
NF9913A_low_388
[»] chr7 (11 HSPs)
chr7 (60-214)||(7403621-7403775)
chr7 (82-211)||(3920847-3920976)
chr7 (80-153)||(13036359-13036432)
chr7 (4-59)||(12904063-12904119)
chr7 (82-121)||(34784249-34784288)
chr7 (5-46)||(13169398-13169439)
chr7 (82-166)||(34784954-34785039)
chr7 (4-59)||(3920990-3921045)
chr7 (92-166)||(46866639-46866714)
chr7 (80-158)||(48311559-48311637)
chr7 (92-188)||(6058312-6058409)
[»] chr4 (7 HSPs)
chr4 (12-214)||(28100691-28100893)
chr4 (4-189)||(26397676-26397863)
chr4 (80-177)||(2691537-2691634)
chr4 (82-121)||(13450151-13450190)
chr4 (12-46)||(11254374-11254408)
chr4 (82-120)||(13438062-13438100)
chr4 (80-120)||(54387711-54387751)
[»] chr3 (8 HSPs)
chr3 (1-214)||(35861659-35861873)
chr3 (82-166)||(30501281-30501366)
chr3 (82-189)||(23875818-23875922)
chr3 (82-121)||(26447957-26447996)
chr3 (82-189)||(17260646-17260753)
chr3 (80-163)||(24846374-24846457)
chr3 (82-142)||(7589476-7589537)
chr3 (4-59)||(32842702-32842758)
[»] chr8 (10 HSPs)
chr8 (18-214)||(15683873-15684068)
chr8 (18-180)||(11719608-11719770)
chr8 (82-166)||(9186477-9186562)
chr8 (89-188)||(4157455-4157554)
chr8 (82-202)||(10770487-10770605)
chr8 (18-59)||(10770619-10770660)
chr8 (82-166)||(11031603-11031688)
chr8 (80-120)||(3152212-3152252)
chr8 (80-120)||(26238947-26238987)
chr8 (82-130)||(29694147-29694195)
[»] scaffold0722 (1 HSPs)
scaffold0722 (18-210)||(4279-4470)
[»] chr1 (6 HSPs)
chr1 (82-213)||(42558085-42558216)
chr1 (74-189)||(3369582-3369697)
chr1 (84-181)||(35009511-35009608)
chr1 (18-111)||(18058051-18058144)
chr1 (82-166)||(25172877-25172962)
chr1 (5-46)||(50554496-50554538)
[»] chr2 (11 HSPs)
chr2 (4-203)||(2359549-2359746)
chr2 (4-187)||(4047720-4047904)
chr2 (80-188)||(161903-162011)
chr2 (80-141)||(31474907-31474968)
chr2 (4-63)||(2359369-2359429)
chr2 (92-189)||(40099115-40099213)
chr2 (80-189)||(37646306-37646415)
chr2 (83-211)||(2359244-2359371)
chr2 (5-46)||(42517873-42517915)
chr2 (90-166)||(10715272-10715349)
chr2 (80-120)||(19581635-19581675)
[»] chr5 (2 HSPs)
chr5 (4-189)||(27077218-27077404)
chr5 (82-158)||(24497902-24497979)
[»] chr6 (3 HSPs)
chr6 (80-187)||(14337820-14337926)
chr6 (4-59)||(17936302-17936358)
chr6 (80-120)||(21068846-21068886)


Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 60 - 214
Target Start/End: Original strand, 7403621 - 7403775
Alignment:
Q  60 ttttcttcaaatcagggttccaattttctgcaaatcaatcaatttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatt 159  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7403621 ttttctgcaaatcagggttccaattttctgcaaatcaatcaatttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatt 7403720  T
Q  160 tgacatgataagtcttgtgagaggttaacacaccatgtcagcatcgttaacacca 214  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7403721 tgacatgataagtcttctgagaggttaacacaccatgtcagcatcgttaacacca 7403775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 211
Target Start/End: Complemental strand, 3920976 - 3920847
Alignment:
Q  82 attttctgcaaatcaatcaatttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgaga 181  Q
    ||||| ||||| |||||||||||| ||||||  |||||||||||||||||  | |||||||| || |||||| ||||||||||||| ||| | |||||||    
T  3920976 attttttgcaattcaatcaatttcatccttgaaaattttgtcactttcgatcatattagtctgtgcttgtgtagcatttgacatgacaagacatgtgaga 3920877  T
Q  182 ggttaacacaccatgtcagcatcgttaaca 211  Q
    |||||||   ||| ||||||| ||||||||    
T  3920876 ggttaactgcccacgtcagcaccgttaaca 3920847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 13036359 - 13036432
Alignment:
Q  80 caattttctgcaaatcaatcaatttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgt 153  Q
    |||||||||| |||||||||||||| ||||||||||||||  ||| ||||| | |||||||||| || ||||||    
T  13036359 caattttctgtaaatcaatcaatttggtccttggtaatttcatcattttcggccaaattagtctctgcttgtgt 13036432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 12904063 - 12904119
Alignment:
Q  4 aattagggttcaaattt-atagatttggggaagaaagagctgttgtataacggccat 59  Q
    ||||||||||||||||| |||||||||| ||||||||||  ||||||||||||||||    
T  12904063 aattagggttcaaattttatagatttggagaagaaagagtcgttgtataacggccat 12904119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 34784288 - 34784249
Alignment:
Q  82 attttctgcaaatcaatcaatttcgtccttggtaattttg 121  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  34784288 attttctgcaaatcaatcaatttcgtccttggaaattttg 34784249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 13169398 - 13169439
Alignment:
Q  5 attagggttcaaatttatagatttggggaagaaagagctgtt 46  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  13169398 attagggtccaaatttatatatttggggaagaaagagctgtt 13169439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 34784954 - 34785039
Alignment:
Q  82 attttctgcaaatcaatcaatttcgtccttggtaatttt-gtcactttcgacaaaattagtctttgtttgtgtggcatttgacatg 166  Q
    ||||||||||||||||||||||| |||||||  |||||| |||||| ||  | ||||||||| ||| || |||||||| |||||||    
T  34784954 attttctgcaaatcaatcaattttgtccttgaaaattttggtcactatcagccaaattagtccttgcttatgtggcatctgacatg 34785039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 3921045 - 3920990
Alignment:
Q  4 aattagggttcaaatttatagatttggggaagaaagagctgttgtataacggccat 59  Q
    ||||||| ||||| |||||||||| |||||||||||||| | ||||||||| ||||    
T  3921045 aattaggtttcaattttatagattcggggaagaaagagccgatgtataacgtccat 3920990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 46866714 - 46866639
Alignment:
Q  92 aatcaatcaatttcgtccttggtaa-ttttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatg 166  Q
    |||||||||||||||||||||| || |||||||||| || ||| | ||||||  ||||| |||||||| |||||||    
T  46866714 aatcaatcaatttcgtccttggaaatttttgtcactatcaacatatttagtccctgtttatgtggcatctgacatg 46866639  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 48311559 - 48311637
Alignment:
Q  80 caattttctgcaaatcaatcaatttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcat 158  Q
    |||||||||  |||||||||||||| |||||| |||||||  ||| ||||| | |||||||||| |  |||||||||||    
T  48311559 caattttctttaaatcaatcaatttggtccttcgtaatttaatcattttcggctaaattagtctctacttgtgtggcat 48311637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 6058312 - 6058409
Alignment:
Q  92 aatcaatcaatttcgtccttggtaa-ttttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaac 188  Q
    |||||||||||||||||||||| || |||||||||| || || || ||||||  || || |||||||| |||||||  ||  | ||||||||||||||    
T  6058312 aatcaatcaatttcgtccttggaaatttttgtcactatcaaccaatttagtccctgcttatgtggcatctgacatggcaacacatgtgagaggttaac 6058409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 28100893 - 28100691
Alignment:
Q  12 ttcaaatttatagatttggggaagaaagagctgttgtataacggccatttttcttcaaatcagggttccaattttctgcaaatcaatcaatttcgtcctt 111  Q
    ||||| ||||||||||||||||||||||| | ||||||| |||||||||||| | ||||||| || |||||||||||||||||||||||||| | |||||    
T  28100893 ttcaattttatagatttggggaagaaagaaccgttgtatgacggccatttttatgcaaatcaaggatccaattttctgcaaatcaatcaattccatcctt 28100794  T
Q  112 ggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaacacaccatgtcagcatcgttaaca 211  Q
    |  |||||||||||||||| | |||||||||| || ||||||| ||| |||||||| ||   |||||||||||||||| ||||  |||||| | ||||||    
T  28100793 gtcaattttgtcactttcggccaaattagtctctgcttgtgtgtcatctgacatgacaaactttgtgagaggttaacataccacatcagcaccattaaca 28100694  T
Q  212 cca 214  Q
    |||    
T  28100693 cca 28100691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 26397676 - 26397863
Alignment:
Q  4 aattagggttcaaattt-atagatttggggaagaaagagctgttgtataacggccatttttcttcaaatcagggt-tccaattttctgcaaatcaatcaa 101  Q
    ||||||||||| ||||| ||||||||| ||||||||||||| | ||||||| | |||| |||| ||||| | ||  ||||||||||||||||||||||||    
T  26397676 aattagggttctaattttatagatttgaggaagaaagagctatagtataacagtcattcttctgcaaattatggaatccaattttctgcaaatcaatcaa 26397775  T
Q  102 tttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaaca 189  Q
    ||| ||| |||| |||||||||||||||| | |||||| || ||| ||||||| ||| |||||||| ||| |||||||||||||||||    
T  26397776 tttggtcattggaaattttgtcactttcggccaaattaatccttgcttgtgtgacatctgacatgacaagccttgtgagaggttaaca 26397863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 2691634 - 2691537
Alignment:
Q  80 caattttctgcaaatcaatcaatttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgt 177  Q
    |||||||||| |||||||||||||| ||||||| ||||||  ||| ||||  | |||||||||   ||||| |||||||||||| || ||||||||||    
T  2691634 caattttctgtaaatcaatcaatttggtccttgctaatttcatcattttcagccaaattagtcccggtttgcgtggcatttgacgtggtaagtcttgt 2691537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 13450151 - 13450190
Alignment:
Q  82 attttctgcaaatcaatcaatttcgtccttggtaattttg 121  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  13450151 attttctgcaaatcaatcaattccgtccttggaaattttg 13450190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 11254408 - 11254374
Alignment:
Q  12 ttcaaatttatagatttggggaagaaagagctgtt 46  Q
    |||||||||||| ||||||||||||||||||||||    
T  11254408 ttcaaatttatatatttggggaagaaagagctgtt 11254374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 120
Target Start/End: Complemental strand, 13438100 - 13438062
Alignment:
Q  82 attttctgcaaatcaatcaatttcgtccttggtaatttt 120  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  13438100 attttctgcaaatcaatcaatttcgtcgttggaaatttt 13438062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 54387711 - 54387751
Alignment:
Q  80 caattttctgcaaatcaatcaatttcgtccttggtaatttt 120  Q
    |||||||||| |||||||||||||| |||||||| ||||||    
T  54387711 caattttctgaaaatcaatcaatttggtccttggcaatttt 54387751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 35861873 - 35861659
Alignment:
Q  1 tataattagggtt-caaatttatagatttggggaagaaagagctgttgtataacggccatttttcttcaaatcagggttccaattttctgcaaatcaatc 99  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |    
T  35861873 tataattagggtttcaattttatagatttggggaagaaagagctgttgtataacgaccatttttcttcaaattagggttccaattttctgcaaatcaaac 35861774  T
Q  100 aatttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaacacaccatgtca 199  Q
     ||||| || |||| |||||||| | ||||  | ||||||||   || |||||| |||| |||||||  ||| ||| ||||||||| ||| || |  |||    
T  35861773 gatttcatctttggcaattttgttaatttcagccaaattagttcctgcttgtgtagcatctgacatggcaagccttttgagaggttcacagactacatca 35861674  T
Q  200 gcatcgttaacacca 214  Q
    |||||||||||||||    
T  35861673 gcatcgttaacacca 35861659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 30501366 - 30501281
Alignment:
Q  82 attttctgcaaatcaatcaatttcgtccttggtaatttt-gtcactttcgacaaaattagtctttgtttgtgtggcatttgacatg 166  Q
    |||||||||||||||||||||||||||||||| |||||| |||||| ||  | ||||||||||||| ||||||||||| |||||||    
T  30501366 attttctgcaaatcaatcaatttcgtccttggaaattttggtcactatcagccaaattagtctttgcttgtgtggcatctgacatg 30501281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 23875922 - 23875818
Alignment:
Q  82 attttctgcaaatcaatcaatttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgaga 181  Q
    |||||||| ||||||||||||||  || |||| || ||||||| ||| | |||||||| |||| ||||| ||| |||  ||||||| |||||||||||||    
T  23875922 attttctgtaaatcaatcaatttgatctttggaaactttgtcaattttgtcaaaattaatctt-gtttgcgtgacat--gacatgacaagtcttgtgaga 23875826  T
Q  182 ggttaaca 189  Q
    ||||||||    
T  23875825 ggttaaca 23875818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 26447996 - 26447957
Alignment:
Q  82 attttctgcaaatcaatcaatttcgtccttggtaattttg 121  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  26447996 attttctgcaaatcaatcaatttcgtccttggaaattttg 26447957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 17260646 - 17260753
Alignment:
Q  82 attttctgcaaatcaatcaatttcgtccttggtaatttt-gtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgag 180  Q
    ||||||||||| |||||||||||||||||||  |||||| |||||| | ||| |||||||||  |  || |||||||| |||||||| ||  | ||||||    
T  17260646 attttctgcaa-tcaatcaatttcgtccttgaaaattttggtcactattgaccaaattagtccctacttatgtggcatctgacatgacaatccatgtgag 17260744  T
Q  181 aggttaaca 189  Q
    |||||||||    
T  17260745 aggttaaca 17260753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 24846374 - 24846457
Alignment:
Q  80 caattttctgcaaatcaatcaatttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgac 163  Q
    ||||||| || ||||| || ||||| ||||||||||||||| ||| ||||| | |||||||||| || || |||| ||||||||    
T  24846374 caattttttgtaaatctatgaatttggtccttggtaattttatcattttcggccaaattagtctctgcttttgtgacatttgac 24846457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 7589537 - 7589476
Alignment:
Q  82 attttctgcaaatcaatcaatttcgtccttggtaattttg-tcactttcgacaaaattagtc 142  Q
    ||||||||||||||||||||||| ||| |||| ||||||| ||| | ||||| |||||||||    
T  7589537 attttctgcaaatcaatcaattttgtcattggaaattttgatcattatcgaccaaattagtc 7589476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 32842758 - 32842702
Alignment:
Q  4 aattagggttcaaattt-atagatttggggaagaaagagctgttgtataacggccat 59  Q
    ||||||||||| ||||| ||||||||| |||||||||| | ||||||||||| ||||    
T  32842758 aattagggttccaattttatagatttgaggaagaaagaaccgttgtataacgaccat 32842702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 15684068 - 15683873
Alignment:
Q  18 tttatagatttggggaagaaagagctgttgtataacggccatttttcttcaaatcagggttccaattttctgcaaatcaatcaatttcgtccttggtaat 117  Q
    ||||||||||||||||||||| ||  ||||||| ||| |||||||||| |||||||||||| ||||||||| ||||||||||||||||| |||||| |||    
T  15684068 tttatagatttggggaagaaa-agtcgttgtatgacgaccatttttctgcaaatcagggtttcaattttcttcaaatcaatcaatttcgcccttggcaat 15683970  T
Q  118 tttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaacacaccatgtcagcatcgttaacacca 214  Q
    |||||||||||| ||||||||| ||| || ||||||| ||| |||||||  ||| |||| |||||||||||| |||| |||| || | |||||||||    
T  15683969 tttgtcactttctacaaaattaatctctgcttgtgtgacatctgacatggcaagccttgggagaggttaacagaccacgtcaacacctttaacacca 15683873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 11719770 - 11719608
Alignment:
Q  18 tttatagatttggggaagaaagagctgttgtataacggccatttttcttcaaatcagggttccaattttctgcaaatcaatcaatttcgtccttggtaat 117  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||| ||||   | |||| |||||| || |||||||||||||| ||||||   |||    
T  11719770 tttatagatttggggaagaaagagccgttgtataacaaccatttttctgcaaaagtgagttcaaattttatgtaaatcaatcaatttggtccttcaaaat 11719671  T
Q  118 tttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgag 180  Q
    ||||||||||||| | |||||| || ||  ||||||| ||| |||||||| ||||||||||||    
T  11719670 tttgtcactttcggccaaattactcctttcttgtgtgacatctgacatgacaagtcttgtgag 11719608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 9186477 - 9186562
Alignment:
Q  82 attttctgcaaatcaatcaatttcgtccttggtaatttt-gtcactttcgacaaaattagtctttgtttgtgtggcatttgacatg 166  Q
    ||||||||||||||||||||||| ||| |||| |||||| |||||| ||| | |||||||||| || ||||||| |||||||||||    
T  9186477 attttctgcaaatcaatcaatttagtcattggaaattttggtcactatcggccaaattagtctctgcttgtgtgacatttgacatg 9186562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 4157554 - 4157455
Alignment:
Q  89 gcaaatcaatcaatttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaac 188  Q
    |||| ||||||||||| |||||||  | ||||||||||||  || |||||| |||||||||||| ||||| |||||||| ||| |  |||||| ||||||    
T  4157554 gcaattcaatcaattttgtccttgaaatttttgtcacttttaaccaaattaatctttgtttgtgaggcatctgacatgacaagccacgtgagatgttaac 4157455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 10770605 - 10770487
Alignment:
Q  82 attttctgcaaatcaatcaatttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgaga 181  Q
    ||||||||||| |||||||||||||||||||  ||  |||||||||||  | |||||||||| |  |||||||| || ||||| |  ||| | |||||||    
T  10770605 attttctgcaattcaatcaatttcgtccttg--aaaattgtcactttcagccaaattagtctctacttgtgtggtatatgacacggcaagccatgtgaga 10770508  T
Q  182 ggttaacacaccatgtcagca 202  Q
     |||||||  |||||||||||    
T  10770507 agttaacagcccatgtcagca 10770487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 10770660 - 10770619
Alignment:
Q  18 tttatagatttggggaagaaagagctgttgtataacggccat 59  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  10770660 tttatagatttggggaagaaagagccgttgtataatggccat 10770619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 11031688 - 11031603
Alignment:
Q  82 attttctgcaaatcaatcaatttcgtccttggtaatttt-gtcactttcgacaaaattagtctttgtttgtgtggcatttgacatg 166  Q
    ||||| ||||||||||| ||||| |||||||| |||||| |||||| ||| | |||||||||| || || |||| ||| |||||||    
T  11031688 attttatgcaaatcaataaatttagtccttggaaattttggtcactatcggccaaattagtctctgcttatgtgacatctgacatg 11031603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 3152252 - 3152212
Alignment:
Q  80 caattttctgcaaatcaatcaatttcgtccttggtaatttt 120  Q
    |||||||||| |||||||||||||| ||||||| |||||||    
T  3152252 caattttctgaaaatcaatcaatttggtccttgataatttt 3152212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 26238987 - 26238947
Alignment:
Q  80 caattttctgcaaatcaatcaatttcgtccttggtaatttt 120  Q
    |||||||||| |||||||||||||| |||||||| ||||||    
T  26238987 caattttctgaaaatcaatcaatttggtccttggcaatttt 26238947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 29694147 - 29694195
Alignment:
Q  82 attttctgcaaatcaatcaatttcgtccttggtaattttgtcactttcg 130  Q
    |||||||| |||||||||||||| ||||||| ||||||| ||| |||||    
T  29694147 attttctgtaaatcaatcaatttggtccttgataattttatcattttcg 29694195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 4470 - 4279
Alignment:
Q  18 tttatagatttggggaagaaagagctgttgtataacggccatttttcttcaaatcagggttccaattttctgcaaatcaatcaatttcgtccttggtaat 117  Q
    |||||||||||| | |||||||||| ||||||||||  |||||||||| |||||||||||||||||||||| | ||||||||||||| ||| |||| |||    
T  4470 tttatagatttgagaaagaaagagccgttgtataaca-ccatttttctacaaatcagggttccaattttctactaatcaatcaatttggtcgttggaaat 4372  T
Q  118 tttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaacacaccatgtcagcatcgttaac 210  Q
    ||||||||||||||  |||||||| | || ||||||| ||| |||| ||| || |||| ||||||||||||| | || || |||| |||||||    
T  4371 tttgtcactttcgatcaaattagtatatgcttgtgtgacatctgacttgacaaatcttttgagaggttaacagaacacgtaagcaacgttaac 4279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 82 - 213
Target Start/End: Complemental strand, 42558216 - 42558085
Alignment:
Q  82 attttctgcaaatcaatcaatttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgaga 181  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||| | |||||||| | || |||||||||||||||||||| ||| |||||||||    
T  42558216 attttctacaaatcaatcaatttcgtccttggcaattttgtcactttcggccaaattagtttatgcttgtgtggcatttgacatgacaagccttgtgaga 42558117  T
Q  182 ggttaacacaccatgtcagcatcgttaacacc 213  Q
    |||||||   |||  |||||| ||||||||||    
T  42558116 ggttaacggtccacatcagcaccgttaacacc 42558085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 3369697 - 3369582
Alignment:
Q  74 gggttccaattttctgcaaatcaatcaatttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtc 173  Q
    |||||| ||||||||| |||||||||||||| |||||||| |||||||||| ||||  | |||||||||| || ||||||| ||| |||||||| ||| |    
T  3369697 gggttcgaattttctgtaaatcaatcaatttagtccttggaaattttgtcattttcagccaaattagtctctgcttgtgtgacatctgacatgacaagcc 3369598  T
Q  174 ttgtgagaggttaaca 189  Q
    ||||||||||| ||||    
T  3369597 ttgtgagaggtaaaca 3369582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 35009511 - 35009608
Alignment:
Q  84 tttctgcaaatcaatcaatttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgaga 181  Q
    ||||||||||||||||||||| ||| || | |||||||||||||||||| |||||||||| || ||||||||||| | |||||  ||| |||||||||    
T  35009511 tttctgcaaatcaatcaatttagtcattcgaaattttgtcactttcgaccaaattagtctctgcttgtgtggcatctaacatggaaagccttgtgaga 35009608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 18058144 - 18058051
Alignment:
Q  18 tttatagatttggggaagaaagagctgttgtataacggccatttttcttcaaatcagggttccaattttctgcaaatcaatcaatttcgtcctt 111  Q
    |||||| |||||||||||||||||  ||| ||||||| |||||||||| ||||   |||||  |||||||| ||||||||||||||| ||||||    
T  18058144 tttataaatttggggaagaaagagtcgttatataacgaccatttttctgcaaacgtgggttataattttctacaaatcaatcaatttggtcctt 18058051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 25172877 - 25172962
Alignment:
Q  82 attttctgcaaatcaatcaatttcgtccttggtaatttt-gtcactttcgacaaaattagtctttgtttgtgtggcatttgacatg 166  Q
    |||||||||||||||||||| ||||||||||| |||||| |||||| |||   |||||||||| || || |||| ||| |||||||    
T  25172877 attttctgcaaatcaatcaaattcgtccttggaaattttggtcactatcggtcaaattagtctctgcttatgtgacatctgacatg 25172962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 50554538 - 50554496
Alignment:
Q  5 attagggttc-aaatttatagatttggggaagaaagagctgtt 46  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  50554538 attagggttccaaatttatatatttggggaagaaagagctgtt 50554496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 2359549 - 2359746
Alignment:
Q  4 aattagggttcaaattta-tagatttggggaagaaagagctgttgtataacggccatttttcttcaaatcagggttccaattttctgcaaatcaatcaat 102  Q
    ||||||||||| |||||| ||||||||||||||||||||    | ||||||| || ||||||  |||||||| |||||||||||||||||||||||||||    
T  2359549 aattagggttccaatttaatagatttggggaagaaagag----tatataacgaccgtttttcg-caaatcagtgttccaattttctgcaaatcaatcaat 2359643  T
Q  103 ttcgtcc--ttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaacacaccatgtcag 200  Q
    ||  |||  |||  ||||||||||||||   | |||||| | | || |||||||||||||||||||  || |||||||||||||| ||| | || |||||    
T  2359644 ttgatccttttgaaaattttgtcacttttagccaaattaatatctgcttgtgtggcatttgacatgtcaaatcttgtgagaggtttacaaaacacgtcag 2359743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 187
Target Start/End: Original strand, 4047720 - 4047904
Alignment:
Q  4 aattagggtt-caaatttatagatttggggaagaaagagctgttgtataacggccatttttcttcaaatcagggttccaattttctgcaaatcaatcaat 102  Q
    |||||||||| ||| |||||||||||||||||||||||| |||||  |||| |  |||||||| ||||   | |||| ||||||||| ||||||| ||||    
T  4047720 aattagggtttcaattttatagatttggggaagaaagagatgttgggtaaccgttatttttctgcaaaagtgagttcgaattttctgtaaatcaaacaat 4047819  T
Q  103 ttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaa 187  Q
    ||  |||||   | |||||| | ||||||| ||||||||   || ||| ||| ||| ||||||||||||||| ||||||| ||||    
T  4047820 ttgatccttaaaatttttgttattttcgaccaaattagttgatgcttgcgtgacatctgacatgataagtctcgtgagagattaa 4047904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 161903 - 162011
Alignment:
Q  80 caattttctgcaaatcaatcaatttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtga 179  Q
    |||||||||| |||||||||||||| |||| |||||||||  ||| ||||| | |||||||||| || ||| ||| ||| |||| || |||||||||| |    
T  161903 caattttctgtaaatcaatcaatttggtccgtggtaatttcatcattttcgcctaaattagtctctgcttgcgtgacatctgacgtggtaagtcttgtaa 162002  T
Q  180 gaggttaac 188  Q
    | |||||||    
T  162003 gcggttaac 162011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 31474907 - 31474968
Alignment:
Q  80 caattttctgcaaatcaatcaatttcgtccttggtaattttgtcactttcgacaaaattagt 141  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||| || || ||||||||||    
T  31474907 caattttctgtaaatcaatcaatttggtccttggtaattttatcatttccggcaaaattagt 31474968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 2359429 - 2359369
Alignment:
Q  4 aattagggtt-caaatttatagatttggggaagaaagagctgttgtataacggccattttt 63  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||||||||  ||||||||    
T  2359429 aattagggtttcaattttatagatttggggaagaaaaagctgttgtataacaaccattttt 2359369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 189
Target Start/End: Original strand, 40099115 - 40099213
Alignment:
Q  92 aatcaatcaatttcgtccttggtaatttt-gtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaaca 189  Q
    ||||||||||||| |||||||| |||||| |||||| ||||| || ||||||  || || |||||||| |||||||| ||  | |||||||||||||||    
T  40099115 aatcaatcaattttgtccttggaaatttttgtcactatcgaccaatttagtccctgcttatgtggcatctgacatgacaacccatgtgagaggttaaca 40099213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 189
Target Start/End: Original strand, 37646306 - 37646415
Alignment:
Q  80 caattttctgcaaatcaatcaatttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtga 179  Q
    |||||||||| |||||||||||||| ||||||| ||||||| ||| |||||   |||||||||  || ||| ||| ||| |||| || |||| ||||| |    
T  37646306 caattttctgtaaatcaatcaattttgtccttgataattttatcattttcggtcaaattagtccctgcttgcgtgacatctgacgtggtaagccttgtaa 37646405  T
Q  180 gaggttaaca 189  Q
    | ||||||||    
T  37646406 gcggttaaca 37646415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 211
Target Start/End: Complemental strand, 2359371 - 2359244
Alignment:
Q  83 ttttctgcaaatcaatcaatttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagag 182  Q
    ||||||| |||| ||||||||| ||||||   |||||||||| |||| |  ||||||||| | | ||||||||| | |||||||  ||| ||||||||||    
T  2359371 ttttctgtaaattaatcaattttgtccttaaaaattttgtcattttcaatcaaattagtcct-gcttgtgtggcttctgacatggcaagccttgtgagag 2359273  T
Q  183 gttaacacaccatgtcagcatcgttaaca 211  Q
    ||||||| | || |||  |||||||||||    
T  2359272 gttaacaaaacaagtcgacatcgttaaca 2359244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 42517915 - 42517873
Alignment:
Q  5 attagggttc-aaatttatagatttggggaagaaagagctgtt 46  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  42517915 attagggttccaaatttatatatttggggaagaaagagctgtt 42517873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 10715349 - 10715272
Alignment:
Q  90 caaatcaatcaatttcgtccttgg-taattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatg 166  Q
    ||||||||||||||||||||||||  ||||| |||||| ||||  |||||| || ||| || |||| |||||||||||    
T  10715349 caaatcaatcaatttcgtccttggaaaatttggtcactatcgatcaaattaatccttgcttatgtgacatttgacatg 10715272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 19581675 - 19581635
Alignment:
Q  80 caattttctgcaaatcaatcaatttcgtccttggtaatttt 120  Q
    |||||||||| |||||||||||||| |||||||| ||||||    
T  19581675 caattttctgaaaatcaatcaatttggtccttggcaatttt 19581635  T

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Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 27077218 - 27077404
Alignment:
Q  4 aattagggttcaaat-ttatagatttggggaagaaagagctgttgtataacggccatttttcttcaaatcagggttccaattttctgcaaatcaatcaat 102  Q
    ||||||||||| ||| |||| ||||||||||||||||||  ||||  ||||    |||||||| ||||   | |||| ||||||||  ||||||||||||    
T  27077218 aattagggttccaatgttatggatttggggaagaaagagacgttgggtaacaattatttttctgcaaaagtgagttcgaattttctataaatcaatcaat 27077317  T
Q  103 ttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtgagaggttaaca 189  Q
    || |||||||| |||||||||| |||   | |||||||||  |||||||||||||| |||||||  ||| |||||||||||||||||    
T  27077318 ttggtccttggaaattttgtcattttaagccaaattagtccatgtttgtgtggcatctgacatggcaagccttgtgagaggttaaca 27077404  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 24497902 - 24497979
Alignment:
Q  82 attttctgcaaatcaatcaatttcgtccttggtaattttg-tcactttcgacaaaattagtctttgtttgtgtggcat 158  Q
    ||||| ||||||||||||||||| |||||||  ||||||| ||||| ||| | |||||||||| || || ||||||||    
T  24497902 attttatgcaaatcaatcaatttggtccttgtaaattttgatcactatcggccaaattagtctctgcttatgtggcat 24497979  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 14337926 - 14337820
Alignment:
Q  80 caattttctgcaaatcaatcaatttcgtccttggtaattttgtcactttcgacaaaattagtctttgtttgtgtggcatttgacatgataagtcttgtga 179  Q
    |||||||||| |||||||||||||| ||||||| ||||||  ||| ||||  | ||||| |||| || ||| ||| ||| ||||||| |||| ||||| |    
T  14337926 caattttctgtaaatcaatcaatttggtccttgataatttcatcattttcagccaaatttgtctctgcttgcgtgacatctgacatggtaag-cttgtaa 14337828  T
Q  180 gaggttaa 187  Q
    ||||||||    
T  14337827 gaggttaa 14337820  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 17936302 - 17936358
Alignment:
Q  4 aattagggtt-caaatttatagatttggggaagaaagagctgttgtataacggccat 59  Q
    |||||||||| ||| |||||||||||| |||||||||| | ||||||||||| ||||    
T  17936302 aattagggtttcaattttatagatttgaggaagaaagaaccgttgtataacgaccat 17936358  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 21068886 - 21068846
Alignment:
Q  80 caattttctgcaaatcaatcaatttcgtccttggtaatttt 120  Q
    |||||||||| |||||||||||||| |||||||| ||||||    
T  21068886 caattttctgaaaatcaatcaatttggtccttggcaatttt 21068846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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