View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_389 (Length: 229)
Name: NF9913A_low_389
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_389 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 434606 - 434834
Alignment:
| Q |
1 |
ttgaatcccttgtattcaatgagtcgaagtcaattgagactcaatgacaaaggtataactaactgcataatttatgaatttggatccataatcttagatg |
100 |
Q |
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| T |
434606 |
ttgaatcccttgtattcaatgagtcgaagtcaattgagactcaatgacaaaggtataactaactgcataatttatgaatttggatccataatcttagatg |
434705 |
T |
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| Q |
101 |
aatcgaatttaattctaacaaaaacactaattaactgaagcaaacgcgaaaaactacctttgtaaatctgggcgacatccatgaaattggaagacaacga |
200 |
Q |
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| T |
434706 |
aatcgaatttaattctcacaaaaacactaattaactgaagcaaacgcgaaaaactacctttgaaaatctgggcgacatccatgaaattggaagacgacga |
434805 |
T |
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| Q |
201 |
aaa-ccctaatcttaaaatgagatccatga |
229 |
Q |
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| T |
434806 |
aaatccctaatctt-aaatgagatccatga |
434834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 17512754 - 17512681
Alignment:
| Q |
120 |
aaaaacactaattaactgaagcaaacgcgaaaaactacctttgtaaatctgggcgacatccatgaaattggaag |
193 |
Q |
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| T |
17512754 |
aaaaacaataactaactgaaacaaacgcgaaaaactacatttgaaaatctaggcgacatccatgaaattggaag |
17512681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 17512893 - 17512780
Alignment:
| Q |
1 |
ttgaatcccttgtattcaatgagtcgaagtcaattgagactcaatgacaaaggtataactaactgcataatttatgaatttggatccataatcttagatg |
100 |
Q |
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|||||||||||| |||||| ||| || |||||||||||||||||||||||||| |||||| | | |||||||||||||| | || |||||||| ||| |
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| T |
17512893 |
ttgaatcccttggcttcaataagttaaaatcaattgagactcaatgacaaaggtacaactaatcgtagaatttatgaatttgaagccctaatcttaaatg |
17512794 |
T |
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| Q |
101 |
aatcgaatttaatt |
114 |
Q |
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| T |
17512793 |
aattgaattcaatt |
17512780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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