View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_392 (Length: 229)
Name: NF9913A_low_392
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_392 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 14576882 - 14577109
Alignment:
| Q |
1 |
tgagttagttaaaacatctatgaaagaatatattttggaatatatgaagaatgttttccttaagaagaatgagaggnnnnnnnttgttgttaagtgcacg |
100 |
Q |
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| T |
14576882 |
tgagttagttaaa-catctatgaaagaatatattttggaatatatgaagaatgttttccttaagaagaatgagaggaaaaaaattgttgttaagtgcacg |
14576980 |
T |
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| Q |
101 |
attgaatgtccatattccatatgagatttagtaagtctgcatcacaaagtaatttttaaattgatagttataagcttgctcatacatgtcatagaactgc |
200 |
Q |
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| T |
14576981 |
attgagtgtccatattccatatgagatttagtaagtctgcatcacaaagtaatttttaaattgatagttataaggttgctcatacatgtcatagaactgc |
14577080 |
T |
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| Q |
201 |
aaagctcaagcaatgcaaaacaaagttga |
229 |
Q |
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| T |
14577081 |
aaagctcaagcaatgcaaaacaaagttga |
14577109 |
T |
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