View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_398 (Length: 228)
Name: NF9913A_low_398
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_398 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 32853658 - 32853431
Alignment:
| Q |
1 |
tgcaaataagttattctctactatgattaatgatcaaaaatctggtgagatgtggtttttagatagtggctgcagcaatcatgtaacagggaatcaaacc |
100 |
Q |
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| T |
32853658 |
tgcaaataagttattctctactatgattaatgatcaaaaatctggtgagatgtggtttttagatagtggctgcagcaatcatgtaacagggaatcaaacc |
32853559 |
T |
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| Q |
101 |
atatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatacta |
200 |
Q |
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| T |
32853558 |
atatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatacta |
32853459 |
T |
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| Q |
201 |
gtcaaggcaacaaacaattcattcatga |
228 |
Q |
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| T |
32853458 |
gtcaaggcaacaaacaattcattcatga |
32853431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 37176794 - 37176567
Alignment:
| Q |
1 |
tgcaaataagttattctctactatgattaatgatcaaaaatctggtgagatgtggtttttagatagtggctgcagcaatcatgtaacagggaatcaaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
37176794 |
tgcaaataagttattctctactatgattaatgataaaaaatctggtgagatgtggtttttagatagtggttgtagcaatcatgtaacagggaatcaaacc |
37176695 |
T |
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| Q |
101 |
atatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatacta |
200 |
Q |
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| T |
37176694 |
atatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatacta |
37176595 |
T |
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| Q |
201 |
gtcaaggcaacaaacaattcattcatga |
228 |
Q |
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| T |
37176594 |
gtcaaggcaacaaacaattcattcatga |
37176567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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