View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_400 (Length: 228)

Name: NF9913A_low_400
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_400
NF9913A_low_400
[»] chr7 (6 HSPs)
chr7 (1-226)||(20934393-20934618)
chr7 (10-197)||(20933371-20933558)
chr7 (1-110)||(30676696-30676811)
chr7 (1-110)||(30676352-30676467)
chr7 (11-79)||(26130657-26130725)
chr7 (24-107)||(18031943-18032032)
[»] chr4 (4 HSPs)
chr4 (1-226)||(22517470-22517707)
chr4 (23-110)||(32632471-32632558)
chr4 (1-110)||(23500223-23500333)
chr4 (51-110)||(20953437-20953496)
[»] scaffold0071 (1 HSPs)
scaffold0071 (1-110)||(58100-58209)
[»] chr2 (6 HSPs)
chr2 (1-110)||(33523953-33524068)
chr2 (1-110)||(23055730-23055839)
chr2 (10-110)||(21212520-21212620)
chr2 (1-110)||(23055263-23055372)
chr2 (1-110)||(49348-49457)
chr2 (1-110)||(21000913-21001022)
[»] chr6 (3 HSPs)
chr6 (1-110)||(17304896-17305011)
chr6 (16-128)||(19139264-19139380)
chr6 (70-110)||(17304582-17304622)
[»] chr5 (1 HSPs)
chr5 (1-79)||(33123028-33123106)
[»] chr8 (7 HSPs)
chr8 (1-110)||(16979211-16979326)
chr8 (38-110)||(44333593-44333665)
chr8 (59-109)||(37805403-37805453)
chr8 (35-110)||(9009126-9009201)
chr8 (69-110)||(11972906-11972947)
chr8 (160-226)||(43791497-43791563)
chr8 (62-106)||(22751848-22751892)
[»] chr1 (2 HSPs)
chr1 (2-110)||(19492160-19492274)
chr1 (29-99)||(36342545-36342615)
[»] chr3 (1 HSPs)
chr3 (1-110)||(48294668-48294775)
[»] scaffold0003 (1 HSPs)
scaffold0003 (45-110)||(243086-243151)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 20934393 - 20934618
Alignment:
Q  1 aagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtcacttactaataatcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20934393 aagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtcacttactaataatcta 20934492  T
Q  101 cttaaacctactaattacttaaaacacctcactagtaatcatagtcactcgtctttttggccttcctttcagaaacacttcatgtttgaggtttacccat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20934493 cttaaacctactaattacttaaaacacctcactagtaatcatagtcactcgtctttttagccttcctttcagaaacacttcatgtttgaggtttacccat 20934592  T
Q  201 aatacccttatcattagttgccttct 226  Q
    ||||||||||||||||||||||||||    
T  20934593 aatacccttatcattagttgccttct 20934618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 20933371 - 20933558
Alignment:
Q  10 cctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtcacttactaataatctacttaaacct 109  Q
    |||||||||||| ||||| ||||||||||||| | |||| |||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20933371 cctttatttacaaataaagagaacattctagtatataaccctaatgggcctcttattatttaatcctaataagtcacttactaataatctacttaaacct 20933470  T
Q  110 actaattacttaaaacacctcactagtaatcatagtcactcgtctttttggccttcctttcagaaacacttcatgtttgaggtttacc 197  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||| |||||| |||||||||||||    
T  20933471 actaattacttaaaacacctcactagtaatcgtagtcactcgtctttttagccttcctttcataaacgcttcatatttgaggtttacc 20933558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 30676696 - 30676811
Alignment:
Q  1 aagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattattta------atcctaatgagtcacttactaat 94  Q
    |||||||| ||||||  |||| ||||| ||||||||||||| |||||| |||||||  |||||||||||||      ||||||||  | |||||||||||    
T  30676696 aagaattcccctttacatacaaataaagagaacattctagtatttaaccctaatgggcctcttattatttaattctgatcctaataggccacttactaat 30676795  T
Q  95 aatctacttaaaccta 110  Q
    ||||||||||||||||    
T  30676796 aatctacttaaaccta 30676811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 30676467 - 30676352
Alignment:
Q  1 aagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattattta------atcctaatgagtcacttactaat 94  Q
    |||||||| ||||||  |||| ||||| |||||||||| || |||||| |||||||  |||||||||||||      ||||||||  | |||||||||||    
T  30676467 aagaattcccctttacatacaaataaagagaacattcttgtatttaaccctaatgggcctcttattatttaattctgatcctaataggccacttactaat 30676368  T
Q  95 aatctacttaaaccta 110  Q
    ||||||||||||||||    
T  30676367 aatctacttaaaccta 30676352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 26130657 - 26130725
Alignment:
Q  11 ctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaat 79  Q
    |||||| |||| ||||| ||||||||||| | ||||||||||||||  ||||||||||| |||||||||    
T  26130657 ctttatatacaaataaagagaacattctaatatttaactctaatgggcctcttattattaaatcctaat 26130725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 18031943 - 18032032
Alignment:
Q  24 taaatagaacattctagtgtttaactctaatggaactcttattatt------taatcctaatgagtcacttactaataatctacttaaac 107  Q
    |||| ||||||||||||| ||||||  ||||||  |||||||||||      ||||||||||| | ||||||||||||||||||||||||    
T  18031943 taaagagaacattctagtatttaaccttaatgggcctcttattatttaatcctaatcctaatgggccacttactaataatctacttaaac 18032032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 22517470 - 22517707
Alignment:
Q  1 aagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtcacttactaataatcta 100  Q
    ||||| || ||||||| |||| ||||| ||||||||||||| | |||| |||||||  ||||||| |||||||||||||| | |||||| ||||||||||    
T  22517470 aagaactcccctttatatacaaataaagagaacattctagtatataaccctaatgggcctcttatcatttaatcctaatgggccacttattaataatcta 22517569  T
Q  101 cttaaaccta------------ctaattacttaaaacacctcactagtaatcatagtcactcgtctttttggccttcctttcagaaacacttcatgtttg 188  Q
    ||||||||||            || ||||||||||| ||||||||||||| | |||||||| ||||| || |||||||||||| ||||||||||| ||||    
T  22517570 cttaaacctaattaactgcttactgattacttaaaatacctcactagtaaacttagtcactagtcttcttagccttcctttcataaacacttcatatttg 22517669  T
Q  189 aggtttacccataatacccttatcattagttgccttct 226  Q
     ||||| || ||||||||||||||||||||||||||||    
T  22517670 gggtttgcctataatacccttatcattagttgccttct 22517707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 32632471 - 32632558
Alignment:
Q  23 ataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtcacttactaataatctacttaaaccta 110  Q
    ||||| ||||||||||||| |||||| |||||||  ||||  |||||||||| ||||||||| ||||||||||||||| || ||||||    
T  32632471 ataaagagaacattctagtatttaaccctaatgggcctctagttatttaatcataatgagtcgcttactaataatctattttaaccta 32632558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 23500223 - 23500333
Alignment:
Q  1 aagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtcact---tactaataat 97  Q
    |||||||| ||||||| | || ||||| |||||||| | ||  |||||||||||||  |||||||||||||||||||||| | ||||   || |||||||    
T  23500223 aagaattcccctttatattcaaataaagagaacattatggt--ttaactctaatgggcctcttattatttaatcctaatgggccacttaataataataat 23500320  T
Q  98 ctacttaaaccta 110  Q
    |||||||||||||    
T  23500321 ctacttaaaccta 23500333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 20953496 - 20953437
Alignment:
Q  51 taatggaactcttattatttaatcctaatgagtcacttactaataatctacttaaaccta 110  Q
    ||||||| |||||||||||||||| |||  || ||||||||||||||||| |||||||||    
T  20953496 taatggacctcttattatttaatcttaacaagccacttactaataatctaattaaaccta 20953437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 58209 - 58100
Alignment:
Q  1 aagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtcacttactaataatcta 100  Q
    |||||||| ||||||| |||| ||||| |||||| |||||| | |||||||||||   |||||||||||||||||||||| | |||||||||||||||||    
T  58209 aagaattcccctttatatacaaataaagagaacaatctagtatgtaactctaatgtgcctcttattatttaatcctaatgggccacttactaataatcta 58110  T
Q  101 cttaaaccta 110  Q
    ||||||||||    
T  58109 cttaaaccta 58100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 33523953 - 33524068
Alignment:
Q  1 aagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatt------taatcctaatgagtcacttactaat 94  Q
    |||||||| ||||||| |||| ||||| ||||||||||||| ||||||||||||||  |||||||||||      ||||||||| | | |||||||||||    
T  33523953 aagaattcccctttatatacaaataaagagaacattctagtatttaactctaatgggcctcttattattaaatcctaatcctaacgggccacttactaat 33524052  T
Q  95 aatctacttaaaccta 110  Q
    ||||||||||||||||    
T  33524053 aatctacttaaaccta 33524068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 23055730 - 23055839
Alignment:
Q  1 aagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtcacttactaataatcta 100  Q
    |||||||| ||||||  |||| ||||| |||| |||||| |||||||| |||||||  ||||||||| |||| ||||||| | ||||||||||| |||||    
T  23055730 aagaattctcctttagatacaaataaagagaagattctattgtttaaccctaatgggcctcttattaattaaccctaatgggccacttactaatgatcta 23055829  T
Q  101 cttaaaccta 110  Q
    ||||||||||    
T  23055830 cttaaaccta 23055839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 21212520 - 21212620
Alignment:
Q  10 cctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtcacttactaataatctacttaaacct 109  Q
    ||||||| |||| ||||| | ||||||||||| | |||| |||||||| || ||||| ||||||||||||| | |||||| |||||||||||||||||||    
T  21212520 cctttatatacaaataaagataacattctagtatataaccctaatggatcttttattgtttaatcctaatgggacacttaataataatctacttaaacct 21212619  T
Q  110 a 110  Q
    |    
T  21212620 a 21212620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23055372 - 23055263
Alignment:
Q  1 aagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtcacttactaataatcta 100  Q
    |||||||| ||||||  |||| ||||| ||||||||||| | |||||| |||| ||  |||||||||||| | ||||  | |||||||||||||||||||    
T  23055372 aagaattctcctttacatacaaataaagagaacattctattatttaaccctaacggccctcttattattttaccctagcgggtcacttactaataatcta 23055273  T
Q  101 cttaaaccta 110  Q
    ||||||||||    
T  23055272 cttaaaccta 23055263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 49457 - 49348
Alignment:
Q  1 aagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtcacttactaataatcta 100  Q
    |||||||| ||||||| |||| ||||| |||||||||||||  || || | ||  |  |||||||||| ||||||||||| | |||||||||||||||||    
T  49457 aagaattcccctttatatacaaataaagagaacattctagtcgttgacccaaacaggcctcttattatctaatcctaatgggccacttactaataatcta 49358  T
Q  101 cttaaaccta 110  Q
    | ||||||||    
T  49357 cctaaaccta 49348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 21001022 - 21000913
Alignment:
Q  1 aagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtcacttactaataatcta 100  Q
    |||||||| ||||||  |||||||| | ||||||||||| | |||||| |||| ||  || |||||||||| |||||||||  |||||||| |||||| |    
T  21001022 aagaattcccctttacatacagatagagagaacattctattatttaaccctaacgggccttttattatttagtcctaatgaaccacttactgataatcaa 21000923  T
Q  101 cttaaaccta 110  Q
    ||||||||||    
T  21000922 cttaaaccta 21000913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 17305011 - 17304896
Alignment:
Q  1 aagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatt------taatcctaatgagtcacttactaat 94  Q
    |||||||| ||||||| |||| ||||| ||||||||||| | |||||| |||||||  |||||||||||      ||||||||| ||| |||||||||||    
T  17305011 aagaattcccctttatatacaaataaagagaacattctaatatttaaccctaatgggcctcttattattaaatcctaatcctaacgagccacttactaat 17304912  T
Q  95 aatctacttaaaccta 110  Q
    ||||||||||||||||    
T  17304911 aatctacttaaaccta 17304896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 19139380 - 19139264
Alignment:
Q  16 tttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtcacttacta--ataatctacttaa--acctac 111  Q
    |||||| ||||| ||| ||||||||| ||||||||||||||  |||||||||||||||| | ||| | |||||||||    || ||| ||||  ||||||    
T  19139380 tttacatataaagagatcattctagtatttaactctaatgggcctcttattatttaatcatgatgggccacttactacctaaacctaattaatgacctac 19139281  T
Q  112 taattacttaaaacacc 128  Q
    |||||||||||||||||    
T  19139280 taattacttaaaacacc 19139264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 17304622 - 17304582
Alignment:
Q  70 taatcctaatgagtcacttactaataatctacttaaaccta 110  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  17304622 taatcctaatgagccacttaataataatctacttaaaccta 17304582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 33123106 - 33123028
Alignment:
Q  1 aagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaat 79  Q
    |||||||| ||||||| |||| ||||| ||||||||||||| ||||||||||||||  ||||||||||| |||||||||    
T  33123106 aagaattcccctttatatacaaataaagagaacattctagtatttaactctaatgggcctcttattattaaatcctaat 33123028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 16979326 - 16979211
Alignment:
Q  1 aagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatt------taatcctaatgagtcacttactaat 94  Q
    ||||||||  |||||| |||| ||||| ||||||||||||| |||||| ||||||   |||||||||||      ||||||||||| | |||||||||||    
T  16979326 aagaattcctctttatatacaaataaagagaacattctagtatttaaccctaatgagtctcttattattatatcataatcctaatgggccacttactaat 16979227  T
Q  95 aatctacttaaaccta 110  Q
    ||||||||||||||||    
T  16979226 aatctacttaaaccta 16979211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 44333665 - 44333593
Alignment:
Q  38 tagtgtttaactctaatggaactcttattatttaatcctaatgagtcacttactaataatctacttaaaccta 110  Q
    |||| |||||| |||||||| |||||||||||||||||||||| | |||||| ||||| ||||||||| ||||    
T  44333665 tagtatttaaccctaatggacctcttattatttaatcctaatgggccacttagtaatactctacttaatccta 44333593  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 37805403 - 37805453
Alignment:
Q  59 ctcttattatttaatcctaatgagtcacttactaataatctacttaaacct 109  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| ||||||    
T  37805403 ctcttattatttaatccaaatgagccacttactaataatctactcaaacct 37805453  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 9009126 - 9009201
Alignment:
Q  35 ttctagtgtttaactctaatggaactcttattatttaatcctaatgagtcacttactaataatctacttaaaccta 110  Q
    ||||||| ||||||  ||||| | ||||| ||||||||||  |||| |||||||||||||||||||||| ||||||    
T  9009126 ttctagtatttaaccttaatgtacctctttttatttaatctgaatgggtcacttactaataatctacttcaaccta 9009201  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 11972947 - 11972906
Alignment:
Q  69 ttaatcctaatgagtcacttactaataatctacttaaaccta 110  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  11972947 ttaatcctaatgggccacttactaataatctacttaaaccta 11972906  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 43791563 - 43791497
Alignment:
Q  160 gccttcctttcagaaacacttcatgtttgaggtttacccataatacccttatcattagttgccttct 226  Q
    |||||||||||| |||| || ||| |||  ||||| ||||||||| |||||||||||||||| ||||    
T  43791563 gccttcctttcataaaccctccatattttgggttttcccataataaccttatcattagttgcattct 43791497  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 22751848 - 22751892
Alignment:
Q  62 ttattatttaatcctaatgagtcacttactaataatctacttaaa 106  Q
    ||||||||||||| ||||| | |||||||||| ||||||||||||    
T  22751848 ttattatttaatcttaatgggccacttactaagaatctacttaaa 22751892  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 19492274 - 19492160
Alignment:
Q  2 agaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaat------gagtcacttactaata 95  Q
    ||||||| ||||||   ||| ||||| ||||||||||||| ||| || ||| |||  |||||||||||||||||||||      |||  |||||||||||    
T  19492274 agaattcccctttaaaaacaaataaagagaacattctagtattttaccctattgggcctcttattatttaatcctaatcctaatgagcaacttactaata 19492175  T
Q  96 atctacttaaaccta 110  Q
    |||||||||||||||    
T  19492174 atctacttaaaccta 19492160  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 36342545 - 36342615
Alignment:
Q  29 agaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtcacttactaataatct 99  Q
    ||||||||||| | |||||| | |||||  || ||||||||||| ||||||| | ||||||||||||||||    
T  36342545 agaacattctattatttaacccaaatgggccttttattatttaaccctaatgggccacttactaataatct 36342615  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 48294775 - 48294668
Alignment:
Q  1 aagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtcacttactaataatcta 100  Q
    ||||||||  |||||| |||| ||||| ||||||| ||| | |||||| |||||||  |||  |  ||||||||| |||| | |||||||||||||||||    
T  48294775 aagaattcctctttatatacaaataaagagaacatactattatttaaccctaatgggcctcaaa--atttaatcccaatgggacacttactaataatcta 48294678  T
Q  101 cttaaaccta 110  Q
    ||||||||||    
T  48294677 cttaaaccta 48294668  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 243086 - 243151
Alignment:
Q  45 taactctaatggaactcttattatttaatcctaatgagtcacttactaataatctacttaaaccta 110  Q
    ||||||||||||  ||||||||||||| || |||||   ||||||||||| |||| ||||||||||    
T  243086 taactctaatgggcctcttattatttagtcataatggcccacttactaatgatctgcttaaaccta 243151  T

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