View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_407 (Length: 226)
Name: NF9913A_low_407
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_407 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 31633132 - 31633245
Alignment:
| Q |
1 |
acaaaaatgttagttagggatgaaacatgtttgaaaataatgaaaatagttgttgtttttattgttttcgaaaatacaatacaattgttcccttcaagag |
100 |
Q |
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| T |
31633132 |
acaaaaatgttagttagggatgaaacatgtttgaaaataatgaaaatagttgttgtttttattgttttcgaaaatacaatacaattgttcccttcaagag |
31633231 |
T |
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| Q |
101 |
tctattttctcatg |
114 |
Q |
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| T |
31633232 |
tctattttctcatg |
31633245 |
T |
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Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 31633307 - 31633357
Alignment:
| Q |
176 |
atgcccatattatcaaagtgtatcaattgattaacaatgctccaatatctg |
226 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31633307 |
atgcccatattatccaagtgtatcaattgattaacaatgctccaatatctg |
31633357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 39963224 - 39963180
Alignment:
| Q |
4 |
aaaatgttagttagggatgaaacatgtttgaaaataatgaaaata |
48 |
Q |
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| T |
39963224 |
aaaatgttagttagggatgaatcatttttgaaaataacgaaaata |
39963180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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