View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_408 (Length: 226)
Name: NF9913A_low_408
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_408 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 34162639 - 34162408
Alignment:
| Q |
3 |
gtaagacaactctcttggaaattgcttctggtcttggcacgcctttgattatacatgatgctactatgcacaggcgctttggcctctttgcacgtgtttt |
102 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
34162639 |
gtaagacaactctcttggaaattgcttctagtcttggcacacctttgattatagatgatgctactatgcccaggtgctttggcctctttgcacgtgtttt |
34162540 |
T |
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| Q |
103 |
gattgatgggcacttatccgagcaactgtttgaaactgttattgtggaccgcgagggacacgc--------tctcggtgcaatacgaacaacgaccctct |
194 |
Q |
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| T |
34162539 |
gattgatgtggacttatatgagcaactgttcgaaactgttattgtggaacaggagggacacacgttgtcagtctcggtgcaatacgaacaacaaccctct |
34162440 |
T |
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| Q |
195 |
ttttgcactcattgtaaaatgctaggacatga |
226 |
Q |
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| T |
34162439 |
ttttgcactcattgtaaaatgctaggacatga |
34162408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 52314506 - 52314733
Alignment:
| Q |
5 |
aagacaactctcttggaaattgcttctggtcttggcacgcctttgattatacatgatgctactatgcacaggcgctttggcctctttgcacgtgttttga |
104 |
Q |
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| T |
52314506 |
aagacaactctcttggaaattgcttctggtctttgaacgcctttgattatagatgatgctactatgcacaggcgctttggcctctttgcacgtgttttaa |
52314605 |
T |
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| Q |
105 |
ttgatgggcacttatccgagcaactgtttgaaactgttattgtggaccgcgagggaca--------cgctctcggtgcaatacgaacaacgaccctcttt |
196 |
Q |
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| T |
52314606 |
ttgatgtggacttatccgagcaactgtttgacactgttattgtgggacgggagggacacactttgtcggtttcggtacaatatgaacaacaaccctcttt |
52314705 |
T |
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| Q |
197 |
ttgcactcattgtaaaatgctaggacat |
224 |
Q |
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| T |
52314706 |
ttgcactcattgtaaaatgctaggacat |
52314733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 41113008 - 41113236
Alignment:
| Q |
5 |
aagacaactctcttggaaattgcttctggtcttggcacgcctttgattatacatgatgctactatgcacaggcgctttggcctctttgcacgtgttttga |
104 |
Q |
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| T |
41113008 |
aagacaactcttttggaaattgcttctggtcttggaacgcctctgattatagatgatgctactatgcacagacgctttggactctttgcacgtgttttga |
41113107 |
T |
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| Q |
105 |
ttgatgggcacttatccgagcaactgtttgaaactgttattgtggaccgcgagggacacgc--------tctcggtgcaatacgaacaacgaccctcttt |
196 |
Q |
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| T |
41113108 |
ttgatgtggacttatccgagcaactgtttgaaactattattgtggaacgcgagggacacgccttgtcaatttcgatacaatacgaacaacaaccctc-tt |
41113206 |
T |
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| Q |
197 |
ttgcactcattgtaaaatgctaggacatga |
226 |
Q |
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| T |
41113207 |
ttgcactcattgtaaaatgttaggacatga |
41113236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 43688870 - 43689099
Alignment:
| Q |
5 |
aagacaactctcttggaaattgcttctggtcttggcacgcctttgattatacatgatgctactatgcacaggcgctttggcctctttgcacgtgttttga |
104 |
Q |
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| T |
43688870 |
aagacaactctcttggaaattgcttatggtcttggaacgcctttgattatcgatgatgctactatgcacaggcgctttggcctctttgcacgtgttttga |
43688969 |
T |
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| Q |
105 |
ttgatgggcacttatccgagcaactgtttgaaactgttattgtggaccgcgagggacacgc--------tctcggtgcaatacgaacaacgaccctcttt |
196 |
Q |
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| T |
43688970 |
ttgatgtggacttatccgaataactatttaaaactattattgtggaacgggagggacacgctttgtcagtttcgatgcaatgcgaacaacatccgtcttt |
43689069 |
T |
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| Q |
197 |
ttgcactcattgtaaaatgctaggacatga |
226 |
Q |
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| T |
43689070 |
ttactctcattgtaagatgctaggacatga |
43689099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 2191889 - 2192118
Alignment:
| Q |
5 |
aagacaactctcttggaaattgcttctggtcttggcacgcctttgattatacatgatgctactatgcacaggcgctttggcctctttgcacgtgttttga |
104 |
Q |
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||||||||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
2191889 |
aagacaactctcttggaaattgcctttggtcttggaacgcctttgattatagatgatgctactatgcacaagcgctttggtctctttgcacgtgttttga |
2191988 |
T |
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| Q |
105 |
ttgatgggcacttatccgagcaactgtttgaaactgttattgtggaccgcgagggacacgc--------tctcggtgcaatacgaacaacgaccctcttt |
196 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||| || || |||||| | | ||||| ||||||||||||| ||||||||| |
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| T |
2191989 |
ttgatgtgggcttatccgagcaactgtttgaaactgttattgtggaacgggatggacacactttttcagtttcggtacaatacgaacaacaaccctcttt |
2192088 |
T |
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| Q |
197 |
ttgcactcattgtaaaatgctaggacatga |
226 |
Q |
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| T |
2192089 |
ttgcactcattgtaaaatgctaggacatga |
2192118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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