View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_41 (Length: 416)

Name: NF9913A_low_41
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_41
NF9913A_low_41
[»] chr1 (1 HSPs)
chr1 (19-411)||(36314413-36314808)
[»] chr8 (31 HSPs)
chr8 (19-363)||(19345129-19345458)
chr8 (31-363)||(19503885-19504202)
chr8 (19-337)||(19390543-19390864)
chr8 (19-366)||(19410740-19411072)
chr8 (19-366)||(19457759-19458091)
chr8 (19-366)||(19522987-19523319)
chr8 (33-187)||(19337427-19337581)
chr8 (20-157)||(19468610-19468747)
chr8 (20-157)||(19555531-19555668)
chr8 (19-179)||(19469524-19469684)
chr8 (19-179)||(19540448-19540608)
chr8 (19-179)||(19592090-19592250)
chr8 (251-363)||(19337681-19337793)
chr8 (264-363)||(19355714-19355813)
chr8 (240-363)||(19468410-19468533)
chr8 (240-363)||(19555331-19555454)
chr8 (240-345)||(19404923-19405028)
chr8 (31-187)||(19355445-19355601)
chr8 (19-145)||(19172846-19172972)
chr8 (19-148)||(19376577-19376706)
chr8 (246-343)||(19376801-19376898)
chr8 (252-363)||(19592308-19592416)
chr8 (252-366)||(19469355-19469466)
chr8 (252-366)||(19540279-19540390)
chr8 (19-145)||(19287674-19287800)
chr8 (19-157)||(19404708-19404846)
chr8 (33-145)||(19370934-19371046)
chr8 (255-337)||(19172660-19172742)
chr8 (252-350)||(19287901-19287999)
chr8 (33-145)||(19341154-19341266)
chr8 (274-321)||(19371145-19371192)
[»] chr6 (2 HSPs)
chr6 (240-336)||(19543241-19543337)
chr6 (16-148)||(19543023-19543155)


Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 36314808 - 36314413
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36314808 acatcaaaaaacgcgggaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccagtgaatgttcaacatatgtatcagta 36314709  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgcagttaaagctgggacgtttatacgatgcgcgctatcctcgaagggcaagttaacaagt 218  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| |||| | ||||||||||||||||||||||||||||    
T  36314708 cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatatgatgggagctatcctcgaagggcaagttaacaagt 36314609  T
Q  219 ggtgatgaagacaatgctagtggagaaattggaaatgcagatatatgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaactt 318  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314608 ggtgttgaagacaatgctagtggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaactt 36314509  T
Q  319 gtagggaacctggtgaggtttttcagaaaaaggtgggaacacc---aagcaaaatggacaatgcatcatcatatgaatggaatgtaatttatggtt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314508 gtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaaaaagcaaaatggacaatgcatcatcatatgaatggaatgtaatttatggtt 36314413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 19345129 - 19345458
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| ||| |||||| || |||||||||||| ||||||||||| ||||||||||| |||||||||||||| | ||| ||||||| ||| ||||||||    
T  19345129 acatcaagaaaagcggcatagcgtattggaaaagcggaaaacttaatagcaatggaatattcgagaacattcccacgaaagttcaacgtatatatcagta 19345228  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgcagttaaagctgggacgtttatacgatgcgcgctatcctcgaagggcaagttaacaagt 218  Q
    ||||||||| ||||||||||||||||||||||||||||| | |||||||| ||||| ||||  ||||||    ||| ||||||| || | ||||  |       
T  19345229 cattattgtctctaacaagaatgaagattctttcgctttcgaagttaaagatgggaagtttgcacgatggcaactaacctcgaacgggaggttagta--- 19345325  T
Q  219 ggtgatgaagacaatgctagtggagaaattggaaatgcagatatatgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaactt 318  Q
    ||| ||||            |||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  19345326 ggtcatga------------tggagatattgggaatgcagatatgtgttatggatataatagcaatggagggtgccaaaaatgggaggaaataccaaatt 19345413  T
Q  319 gtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaa 363  Q
    ||||||||  |||||||||||||||||||| ||||||||||||||    
T  19345414 gtagggaaaatggtgaggtttttcagaaaatggtgggaacaccaa 19345458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 31 - 363
Target Start/End: Complemental strand, 19504202 - 19503885
Alignment:
Q  31 gcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttc 130  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |  || ||||||| ||| ||||||||||||||||| ||    
T  19504202 gcggcaaagtgcattggaaaagcggaaaacttaaaagcaatggaatattcgagaacattcccacaaaagttcaacgtatatatcagtacattattgtctc 19504103  T
Q  131 taacaagaatgaagattctttcgcttttgcagttaaagctgggacgtttatacgatgcgcgctatcctcgaagggcaagttaacaagtggtgatgaagac 230  Q
    ||||||||||||||||||||||||||| | |||||||| ||||| ||||  ||||||    ||| |||||||||| | ||||  |   ||| ||||        
T  19504102 taacaagaatgaagattctttcgctttcgaagttaaagatgggaagtttgcacgatggcaactaacctcgaaggggaggttagta---ggtcatga---- 19504010  T
Q  231 aatgctagtggagaaattggaaatgcagatatatgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctg 330  Q
            |||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  ||    
T  19504009 --------tggagagattgggaatgcagatatgtgttatggatataatagcaatggagggtgccaaaaatgggaggaaataccaaattgtagggaaaatg 19503918  T
Q  331 gtgaggtttttcagaaaaaggtgggaacaccaa 363  Q
    ||||||||||||||||||  | |||||||||||    
T  19503917 gtgaggtttttcagaaaattgcgggaacaccaa 19503885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 19390543 - 19390864
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||  | ||||||||||||||  |||||||||||| ||| ||||| ||    
T  19390543 acatcaagaaacgcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggtttattcgagaacattccggtgaatgttcaacgtatatatcaata 19390642  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgcagttaaagctgggacgtttatacgatgcgcgctatcctcgaagggcaagttaacaagt 218  Q
    ||||||||| ||||||||| ||||||||||||| ||||| | |||||||| ||||| ||||||||||||     |  |||||||||| | ||||| ||||    
T  19390643 cattattgtctctaacaaggatgaagattcttttgctttcgaagttaaagatgggaagtttatacgatggttcattacctcgaaggggaggttaataagt 19390742  T
Q  219 ggtgatga---agacaatgctagtggagaaattggaaatgcagatatatgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaa 315  Q
    | ||||||   ||| | |  ||||| ||| ||||  ||||||||||  ||||| |||||||||||  |||  ||||||||||||||||||||||||||||    
T  19390743 gctgatgagggagagatttatagtgcagacattgctaatgcagataagtgttatggatataatagtgatgccgggtgccaaaaatgggaggatataccaa 19390842  T
Q  316 cttgtagggaacctggtgaggt 337  Q
    |||| ||||| ||| |||||||    
T  19390843 cttgcagggaccctcgtgaggt 19390864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 19410740 - 19411072
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    |||||||||  || |||||||||    
T  19410740 acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaagtaggtatcagta 19410839  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgcagttaaagctgggacgtttatacgatgcgcgctatcctcgaagggcaagttaacaagt 218  Q
    ||||||||| ||||||||| |||||||||||||| | || | |||||||| ||||| ||||  || ||| |  |||||||||||||| ||||||  |       
T  19410840 cattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagtttgcacaatgggaactatcctcgaaggggaagttagta--- 19410936  T
Q  219 ggtgatgaagacaatgctagtggagaaattggaaatgcagatatatgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaactt 318  Q
    ||||||||            |||| | ||||  ||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||    
T  19410937 ggtgatga------------tggatatattgctaatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaactt 19411024  T
Q  319 gtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaagca 366  Q
    | ||||||||||||||| | ||||||||||||| ||||| ||||||||    
T  19411025 gcagggaacctggtgagatgtttcagaaaaaggcgggaagaccaagca 19411072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 19457759 - 19458091
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    |||||||||  || |||||||||    
T  19457759 acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaagtaggtatcagta 19457858  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgcagttaaagctgggacgtttatacgatgcgcgctatcctcgaagggcaagttaacaagt 218  Q
    ||||||||| ||||||||| |||||||||||||| | || | |||||||| ||||| ||||  || ||| |  |||||||||||||| ||||||  |       
T  19457859 cattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagtttgcacaatgggaactatcctcgaaggggaagttagta--- 19457955  T
Q  219 ggtgatgaagacaatgctagtggagaaattggaaatgcagatatatgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaactt 318  Q
    ||||||||            |||| | ||||  ||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||    
T  19457956 ggtgatga------------tggatatattgctaatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaactt 19458043  T
Q  319 gtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaagca 366  Q
    | ||||||||||||||| | ||||||||||||| ||||| ||||||||    
T  19458044 gcagggaacctggtgagatgtttcagaaaaaggcgggaagaccaagca 19458091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 19523319 - 19522987
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    |||||||||  || |||||||||    
T  19523319 acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaagtaggtatcagta 19523220  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgcagttaaagctgggacgtttatacgatgcgcgctatcctcgaagggcaagttaacaagt 218  Q
    ||||||||| ||||||||| |||||||||||||| | || | |||||||| ||||| ||||  || ||| |  |||||||||||||| ||||||  |       
T  19523219 cattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagtttgcacaatgggaactatcctcgaaggggaagttagta--- 19523123  T
Q  219 ggtgatgaagacaatgctagtggagaaattggaaatgcagatatatgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaactt 318  Q
    ||||||||            |||| | ||||  ||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||    
T  19523122 ggtgatga------------tggatatattgctaatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaactt 19523035  T
Q  319 gtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaagca 366  Q
    | ||||||||||||||| | ||||||||||||| ||||| ||||||||    
T  19523034 gcagggaacctggtgagatgtttcagaaaaaggcgggaagaccaagca 19522987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 33 - 187
Target Start/End: Original strand, 19337427 - 19337581
Alignment:
Q  33 ggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttcta 132  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||   ||| ||||||| ||| || |||||||||||||| ||||    
T  19337427 ggcaaagtgcattggaaaagtggaaaactcaaaagcaatggaatgttcgagaacattcctgcgaaagttcaacgtatataccagtacattattgtgtcta 19337526  T
Q  133 acaagaatgaagattctttcgcttttgcagttaaagctgggacgtttatacgatg 187  Q
    ||||| ||||||||||||| ||||||| |||||||| |||||  |||||||||||    
T  19337527 acaaggatgaagattcttttgcttttgaagttaaagatgggaaatttatacgatg 19337581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 19468747 - 19468610
Alignment:
Q  20 catcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtac 119  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||  ||||||||||||||||||||||||||    
T  19468747 catcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggtgaatgttcaacatatgtatcagtac 19468648  T
Q  120 attattgtttctaacaagaatgaagattctttcgcttt 157  Q
    |||||||| ||||||||  | |||||||||||| ||||    
T  19468647 attattgtctctaacaaagacgaagattctttcacttt 19468610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 19555668 - 19555531
Alignment:
Q  20 catcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtac 119  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||  ||||||||||||||||||||||||||    
T  19555668 catcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggtgaatgttcaacatatgtatcagtac 19555569  T
Q  120 attattgtttctaacaagaatgaagattctttcgcttt 157  Q
    |||||||| ||||||||  | |||||||||||| ||||    
T  19555568 attattgtctctaacaaagacgaagattctttcacttt 19555531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 19469684 - 19469524
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    ||||||||| ||| |||||||||    
T  19469684 acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaataggtatcagta 19469585  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgcagttaaagctgggacgttt 179  Q
    ||||||||| ||||||||| |||||||||||||| | || | |||||||| ||||| ||||    
T  19469584 cattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt 19469524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 19540608 - 19540448
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    ||||||||| ||| |||||||||    
T  19540608 acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaataggtatcagta 19540509  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgcagttaaagctgggacgttt 179  Q
    ||||||||| ||||||||| |||||||||||||| | || | |||||||| ||||| ||||    
T  19540508 cattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt 19540448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 19592090 - 19592250
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    ||||||||| ||| |||||||||    
T  19592090 acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaataggtatcagta 19592189  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgcagttaaagctgggacgttt 179  Q
    ||||||||| ||||||||| |||||||||||||| | || | |||||||| ||||| ||||    
T  19592190 cattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt 19592250  T

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Target: chr8; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 251 - 363
Target Start/End: Original strand, 19337681 - 19337793
Alignment:
Q  251 aaatgcagatatatgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaag 350  Q
    ||||||||| || ||||| |||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |    
T  19337681 aaatgcagacatgtgttatggatataatagcgatggagggtgccaaaaatgggaggaaataccaaattgtagggaacctggtgaggtttttcggaaaatg 19337780  T
Q  351 gtgggaacaccaa 363  Q
    ||||||| |||||    
T  19337781 gtgggaagaccaa 19337793  T

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Target: chr8; HSP #14
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 264 - 363
Target Start/End: Original strand, 19355714 - 19355813
Alignment:
Q  264 tgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaa 363  Q
    ||||| |||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  19355714 tgttatggatataatagcgatggagggtgccaaaaatgggaggaaataccaaattgtagggaacctggtgaggtttttcggaaaaaggtgggaagaccaa 19355813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 240 - 363
Target Start/End: Complemental strand, 19468533 - 19468410
Alignment:
Q  240 ggagaaattggaaatgcagatatatgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggttt 339  Q
    ||||| |||| |||||||||||| ||||| |||||||||||  ||||||| |||||||||||||||||||||||||||||||||| |||||||||||  |    
T  19468533 ggagatattgtaaatgcagatatgtgttatggatataatagtgatggaggatgccaaaaatgggaggatataccaacttgtagggcacctggtgaggggt 19468434  T
Q  340 ttcagaaaaaggtgggaacaccaa 363  Q
    |||||||||||| ||||| |||||    
T  19468433 ttcagaaaaaggcgggaagaccaa 19468410  T

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Target: chr8; HSP #16
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 240 - 363
Target Start/End: Complemental strand, 19555454 - 19555331
Alignment:
Q  240 ggagaaattggaaatgcagatatatgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggttt 339  Q
    ||||| |||| |||||||||||| ||||| |||||||||||  ||||||| |||||||||||||||||||||||||||||||||| |||||||||||  |    
T  19555454 ggagatattgtaaatgcagatatgtgttatggatataatagtgatggaggatgccaaaaatgggaggatataccaacttgtagggcacctggtgaggggt 19555355  T
Q  340 ttcagaaaaaggtgggaacaccaa 363  Q
    |||||||||||| ||||| |||||    
T  19555354 ttcagaaaaaggcgggaagaccaa 19555331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 240 - 345
Target Start/End: Original strand, 19404923 - 19405028
Alignment:
Q  240 ggagaaattggaaatgcagatatatgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggttt 339  Q
    ||||| ||||||||||||||||| ||||| |||||||||||  | |||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  19404923 ggagatattggaaatgcagatatgtgttatggatataatagggacggagggtgccaaaagtgggaggatataccaacttgtagggaacctggtgaggtgt 19405022  T
Q  340 ttcaga 345  Q
    ||||||    
T  19405023 ttcaga 19405028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 187
Target Start/End: Original strand, 19355445 - 19355601
Alignment:
Q  31 gcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttc 130  Q
    ||||||||||| |||||||||| |||||||||| ||| |||||||| |||||||||||||||  ||| ||||||  ||| |||| |||||||||||| ||    
T  19355445 gcggcaaagtgcattggaaaagcggaaaacttagaagtaatggaatattcgagaacattccagcgaaagttcaaagtatatatcggtacattattgtgtc 19355544  T
Q  131 taacaagaatgaagattctttcgcttttgcagttaaagctgggacgtttatacgatg 187  Q
    ||||||| ||||||||||||| ||||| | |||||| | |||||  |||||||||||    
T  19355545 taacaaggatgaagattcttttgctttcgaagttaatgatgggaattttatacgatg 19355601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 19172972 - 19172846
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    |||||||  ||||||||||||||||||||||||| ||||||||||| ||||||||| | ||| ||||||||| | |||| ||||||||| ||||||| ||    
T  19172972 acatcaagcaacgcggcaaagtgtattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgtatcaata 19172873  T
Q  119 cattattgtttctaacaagaatgaaga 145  Q
    ||||||||| ||||||||| |||||||    
T  19172872 cattattgtctctaacaaggatgaaga 19172846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 19376577 - 19376706
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    ||||||||| ||||||||| |||    
T  19376577 acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaatatgtatcggta 19376676  T
Q  119 cattattgtttctaacaagaatgaagattc 148  Q
    ||| ||||| ||||||||| ||||||||||    
T  19376677 catcattgtctctaacaaggatgaagattc 19376706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 246 - 343
Target Start/End: Original strand, 19376801 - 19376898
Alignment:
Q  246 attggaaatgcagatatatgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttca 343  Q
    ||||||||||||||||||||||| |||||||||||  || ||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||    
T  19376801 attggaaatgcagatatatgttatggatataatagtgatcgagggtgccaaaaatgggaggatataccagcttgcagggaacctggtgaggtgtttca 19376898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 252 - 363
Target Start/End: Original strand, 19592308 - 19592416
Alignment:
Q  252 aatgcagatatatgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 351  Q
    ||||||||||| ||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19592308 aatgcagatatgtgttacggatatagtg---atggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtttttcagaaaaagg 19592404  T
Q  352 tgggaacaccaa 363  Q
     |||||||||||    
T  19592405 cgggaacaccaa 19592416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 252 - 366
Target Start/End: Complemental strand, 19469466 - 19469355
Alignment:
Q  252 aatgcagatatatgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 351  Q
    ||||||||||| ||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  19469466 aatgcagatatgtgttacggatatagtg---atggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtgtttcagaaaaagg 19469370  T
Q  352 tgggaacaccaagca 366  Q
     ||||| ||||||||    
T  19469369 cgggaagaccaagca 19469355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 252 - 366
Target Start/End: Complemental strand, 19540390 - 19540279
Alignment:
Q  252 aatgcagatatatgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 351  Q
    ||||||||||| ||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  19540390 aatgcagatatgtgttacggatatagtg---atggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtgtttcagaaaaagg 19540294  T
Q  352 tgggaacaccaagca 366  Q
     ||||| ||||||||    
T  19540293 cgggaagaccaagca 19540279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 19287674 - 19287800
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    |||||||  ||||||||||||||||||||||||| ||||||| || | |||||||  | ||||||||||||||| |||| ||||||| | ||||||| ||    
T  19287674 acatcaagcaacgcggcaaagtgtattggaaaagcggaaaacgtagacgcaatggtttattcgagaacattccagtgaaagttcaacgtgtgtatcaata 19287773  T
Q  119 cattattgtttctaacaagaatgaaga 145  Q
    ||||||||| ||||||||| |||||||    
T  19287774 cattattgtctctaacaaggatgaaga 19287800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 19404708 - 19404846
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| ||| | |||||||||||||||||||| ||||||||||||||| ||||| | |||||||| |||||    |||||||||  ||||||||| ||    
T  19404708 acatcaagaaaagaggcaaagtgtattggaaaagcggaaaacttaaaagcgatggattattcgagaatattccggccaatgttcaaactatgtatcaata 19404807  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttt 157  Q
    || |||||| ||||||||| |||||||||||||| ||||    
T  19404808 cactattgtctctaacaaggatgaagattctttcacttt 19404846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 19370934 - 19371046
Alignment:
Q  33 ggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttcta 132  Q
    ||||||||| ||||||||||||||||||||| |||||||||| | |||||||||||||||  |||||| |||||| ||||||  ||||| ||||| ||||    
T  19370934 ggcaaagtgcattggaaaagtggaaaacttagaagcaatggattattcgagaacattccagagaatgtccaacatgtgtatcgatacatgattgtctcta 19371033  T
Q  133 acaagaatgaaga 145  Q
    ||||  |||||||    
T  19371034 acaaagatgaaga 19371046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 337
Target Start/End: Complemental strand, 19172742 - 19172660
Alignment:
Q  255 gcagatatatgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggt 337  Q
    |||||||| ||||| || ||||||| | |||||||||||||||||||||||||||||||||| || |||||||| ||||||||    
T  19172742 gcagatatgtgttatggctataataccgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggt 19172660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 252 - 350
Target Start/End: Original strand, 19287901 - 19287999
Alignment:
Q  252 aatgcagatatatgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaag 350  Q
    ||||||||||  ||||| ||||||||||   ||| |||||||||||||||||||||||| |||||||| ||||||| ||||||||| ||||| ||||||    
T  19287901 aatgcagataagtgttatggatataataatgatgaagggtgccaaaaatgggaggatatgccaacttgcagggaacgtggtgaggtctttcaaaaaaag 19287999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 19341154 - 19341266
Alignment:
Q  33 ggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttcta 132  Q
    ||||||||| ||||||||||||||||||||  |||||||||| | ||||||||||||| |  |||||| |||||| ||||||  ||||| ||||| ||||    
T  19341154 ggcaaagtgcattggaaaagtggaaaacttggaagcaatggattattcgagaacattctagagaatgtccaacatgtgtatcgatacatgattgtctcta 19341253  T
Q  133 acaagaatgaaga 145  Q
    ||||  |||||||    
T  19341254 acaaagatgaaga 19341266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 19371145 - 19371192
Alignment:
Q  274 ataatagcaatggagggtgccaaaaatgggaggatataccaacttgta 321  Q
    ||||||| ||||| || ||||||||||||||| |||||||||||||||    
T  19371145 ataatagtaatggtggatgccaaaaatgggagtatataccaacttgta 19371192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 240 - 336
Target Start/End: Original strand, 19543241 - 19543337
Alignment:
Q  240 ggagaaattggaaatgcagatatatgttagggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgagg 336  Q
    ||||| ||||||||||||||  | ||||| |||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19543241 ggagatattggaaatgcagacttgtgttatggatataatatcaacggagggtgccaaaaatgggaggatataccaagttgtagggaacctggtgagg 19543337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 19543023 - 19543155
Alignment:
Q  16 tggacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatca 115  Q
    |||| ||||| ||| |||||||||||||||||||||| |||||||||| ||| |||||  | |||| |||||| ||   ||||||||||| | ||||| |    
T  19543023 tggaaatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttagaagaaatgggttattcgtgaacataccggcgaatgttcaacgtgtgtatga 19543122  T
Q  116 gtacattattgtttctaacaagaatgaagattc 148  Q
     ||||||||||||||||| ||  ||||||||||    
T  19543123 atacattattgtttctaagaaagatgaagattc 19543155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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