View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_413 (Length: 225)

Name: NF9913A_low_413
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_413
NF9913A_low_413
[»] chr8 (13 HSPs)
chr8 (9-216)||(10279543-10279750)
chr8 (16-138)||(17888052-17888174)
chr8 (9-138)||(8358752-8358881)
chr8 (113-182)||(35225944-35226013)
chr8 (113-184)||(12157181-12157256)
chr8 (113-184)||(19262657-19262732)
chr8 (62-151)||(41527035-41527124)
chr8 (62-154)||(15342303-15342395)
chr8 (62-154)||(15431368-15431460)
chr8 (62-154)||(15522672-15522764)
chr8 (57-95)||(18430871-18430909)
chr8 (70-140)||(38290544-38290614)
chr8 (62-136)||(43215553-43215627)
[»] chr4 (12 HSPs)
chr4 (16-162)||(13918224-13918370)
chr4 (62-151)||(6554533-6554622)
chr4 (24-152)||(37530085-37530212)
chr4 (70-138)||(316508-316576)
chr4 (7-138)||(6559827-6559958)
chr4 (45-104)||(48683524-48683583)
chr4 (63-140)||(285103-285180)
chr4 (9-129)||(55051911-55052032)
chr4 (113-173)||(4236391-4236451)
chr4 (113-173)||(4279722-4279782)
chr4 (62-138)||(42727175-42727251)
chr4 (62-127)||(52542093-52542160)
[»] chr6 (9 HSPs)
chr6 (21-168)||(15878817-15878964)
chr6 (64-154)||(9449611-9449701)
chr6 (62-140)||(4852811-4852889)
chr6 (62-140)||(11554389-11554467)
chr6 (113-161)||(10191104-10191152)
chr6 (62-136)||(1599848-1599922)
chr6 (62-140)||(24397919-24397996)
chr6 (9-138)||(18089938-18090067)
chr6 (113-153)||(2953185-2953225)
[»] chr5 (5 HSPs)
chr5 (63-155)||(3008216-3008310)
chr5 (57-153)||(3009391-3009489)
chr5 (65-154)||(11769770-11769859)
chr5 (62-149)||(9024946-9025033)
chr5 (9-129)||(4064019-4064140)
[»] chr3 (7 HSPs)
chr3 (9-138)||(20779566-20779695)
chr3 (62-154)||(10020102-10020194)
chr3 (89-161)||(40416275-40416347)
chr3 (102-165)||(10021092-10021155)
chr3 (102-167)||(32971201-32971266)
chr3 (113-164)||(51083-51134)
chr3 (102-165)||(10021811-10021874)
[»] chr7 (5 HSPs)
chr7 (9-159)||(18290421-18290571)
chr7 (113-182)||(36837376-36837445)
chr7 (7-148)||(6678296-6678437)
chr7 (62-140)||(42078961-42079041)
chr7 (113-153)||(43989679-43989719)
[»] chr1 (5 HSPs)
chr1 (24-152)||(28963486-28963613)
chr1 (113-148)||(3982724-3982759)
chr1 (113-143)||(47783153-47783183)
chr1 (70-138)||(31089550-31089618)
chr1 (71-179)||(49882679-49882787)
[»] scaffold2049 (1 HSPs)
scaffold2049 (21-152)||(212-342)
[»] scaffold0012 (1 HSPs)
scaffold0012 (21-152)||(94714-94844)
[»] chr2 (9 HSPs)
chr2 (11-138)||(20106611-20106738)
chr2 (70-138)||(31963709-31963777)
chr2 (62-136)||(5788097-5788171)
chr2 (70-142)||(14905101-14905171)
chr2 (62-151)||(31965846-31965935)
chr2 (113-153)||(17680963-17681003)
chr2 (62-136)||(41754007-41754081)
chr2 (62-136)||(45661109-45661183)
chr2 (104-140)||(36720076-36720112)
[»] scaffold0114 (2 HSPs)
scaffold0114 (62-151)||(37032-37121)
scaffold0114 (62-163)||(1350-1449)
[»] scaffold0284 (1 HSPs)
scaffold0284 (7-138)||(7537-7668)
[»] scaffold0051 (1 HSPs)
scaffold0051 (114-181)||(18270-18337)
[»] scaffold0159 (1 HSPs)
scaffold0159 (62-136)||(32470-32544)
[»] scaffold0107 (1 HSPs)
scaffold0107 (103-149)||(43666-43712)
[»] scaffold0380 (1 HSPs)
scaffold0380 (65-136)||(15272-15343)
[»] scaffold0211 (1 HSPs)
scaffold0211 (62-151)||(18458-18547)
[»] scaffold1345 (1 HSPs)
scaffold1345 (113-153)||(1845-1885)
[»] scaffold0216 (1 HSPs)
scaffold0216 (62-138)||(29169-29245)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 10279750 - 10279543
Alignment:
Q  9 tgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtag 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10279750 tgagattgacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtag 10279651  T
Q  109 aaggttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctgtaagtatgtgacgataaggaatttgaacatgagagaga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  10279650 aaggttaactcacacttgacacattaacatctattaatcaagtgtgcgactatccacgtctgtaattatgtgacgataaggaatttaaacatgagagaga 10279551  T
Q  209 cgataagg 216  Q
    ||||||||    
T  10279550 cgataagg 10279543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 17888174 - 17888052
Alignment:
Q  16 gacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggtta 115  Q
    |||| |||||||||||| ||||||| ||| |||||   |||| |  ||||||| |||||||||||| ||||||||||||| |||  | |||| || ||||    
T  17888174 gacaccacatctttacataaaaccttaagacattatgtatttcggtcatctcacttatatgttgttcaaaatctactcttccatccagtgtataatgtta 17888075  T
Q  116 actcacacttgacacattaacat 138  Q
    ||||||| |||||||||||||||    
T  17888074 actcacatttgacacattaacat 17888052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 8358752 - 8358881
Alignment:
Q  9 tgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtag 108  Q
    |||||| |||| ||||| |||||| ||||||| ||| |||||   |||| |  ||||||| |||||||||||| ||||||||||||| |||  | ||||     
T  8358752 tgagattgacaccacatatttacataaaaccttaagacattatgtatttcggtcatctcacttatatgttgttcaaaatctactcttccatcgagtgtat 8358851  T
Q  109 aaggttaactcacacttgacacattaacat 138  Q
    || ||||||||||| |||||||||||||||    
T  8358852 aacgttaactcacatttgacacattaacat 8358881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 35225944 - 35226013
Alignment:
Q  113 ttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctgtaagtatgtgac 182  Q
    |||||||| ||||||||||||||||||| ||| |||||||||||||| |||| || ||||| ||||||||    
T  35225944 ttaactcatacttgacacattaacatcttttattcaagtgtgtgactctccaagtttgtaattatgtgac 35226013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 12157256 - 12157181
Alignment:
Q  113 ttaactcacacttgacacattaacatctattaatcaagtgtgtgact----atccacgtctgtaagtatgtgacga 184  Q
    |||||||||| |||||||||||| |||| |||||||||||| |||||    ||||| |||||||| ||||||||||    
T  12157256 ttaactcacaattgacacattaatatcttttaatcaagtgtatgactctccatccatgtctgtaattatgtgacga 12157181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 19262657 - 19262732
Alignment:
Q  113 ttaactcacacttgacacattaacatctattaatcaagtgtgtgact----atccacgtctgtaagtatgtgacga 184  Q
    |||| |||||||||||| |||||||||| ||||||||||||| ||||    ||||| |||||||| ||||||||||    
T  19262657 ttaagtcacacttgacagattaacatcttttaatcaagtgtgcgactctccatccatgtctgtaattatgtgacga 19262732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 41527035 - 41527124
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagt 151  Q
    ||||||| ||||||||| || |||||||||||||  ||  | | |||||  ||||||||||||||||||||||| |||| ||| ||||||    
T  41527035 catctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaatatctcttattcaagt 41527124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 15342303 - 15342395
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtg 154  Q
    ||||||| |||||||||||| ||||| || |||| |||  ||| || ||  ||||||||||||| | ||||||| |||| |||||||||||||    
T  15342303 catctcacttatatgttgttcaaaatgtaatcttccatccaatatataactttaactcacacttaatacattaatatctcttaatcaagtgtg 15342395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 15431368 - 15431460
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtg 154  Q
    ||||||| |||||||||||| ||||| || |||| |||  ||| || ||  ||||||||||||| | ||||||| |||| |||||||||||||    
T  15431368 catctcacttatatgttgttcaaaatgtaatcttccatccaatatataactttaactcacacttaatacattaatatctcttaatcaagtgtg 15431460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 15522672 - 15522764
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtg 154  Q
    ||||||| |||||||||||| ||||| || |||| |||  ||| || ||  ||||||||||||| | ||||||| |||| |||||||||||||    
T  15522672 catctcacttatatgttgttcaaaatgtaatcttccatccaatatataactttaactcacacttaatacattaatatctcttaatcaagtgtg 15522764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 18430871 - 18430909
Alignment:
Q  57 tggaccatctcatttatatgttgttgaaaatctactctt 95  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  18430871 tggagcatctcatttatatgttgttgaaaatttactctt 18430909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 38290614 - 38290544
Alignment:
Q  70 ttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatct 140  Q
    ||||||||| || || || | ||||| ||||||||||| ||   |||||||||||||||||||||||||||    
T  38290614 ttatatgtttttaaacattttctcttgcatgtaatgtaaaattataactcacacttgacacattaacatct 38290544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 43215553 - 43215627
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaac 136  Q
    ||||||| |||||||||| | || || ||||||| |||  |||||| ||||||||||||||| || |||||||||    
T  43215553 catctcacttatatgttgcttaatatttactcttgcatcaaatgtaaaaggttaactcacacatgtcacattaac 43215627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 13918370 - 13918224
Alignment:
Q  16 gacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggtta 115  Q
    |||| |||||||||||| ||||||| ||| |||||   |||| |  ||||||| |||||||||||||||||||||||||| |||  |||||| || ||||    
T  13918370 gacaccacatctttacataaaaccttaagacattatgtatttcggtcatctcaattatatgttgttgaaaatctactcttccatccaatgtataacgtta 13918271  T
Q  116 actcacacttgacacattaacatctattaatcaagtgtgtgactatc 162  Q
    ||||||| ||||||||||||||| |  |||| || ||||||||||||    
T  13918270 actcacatttgacacattaacatatcctaatgaattgtgtgactatc 13918224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 6554622 - 6554533
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagt 151  Q
    ||||||| ||||||||| || ||||||||||||| |||  | | |||||  |||||||||||||||||||||||||||| ||| ||||||    
T  6554622 catctcacttatatgttattcaaaatctactcttccatccactatagaattttaactcacacttgacacattaacatctcttattcaagt 6554533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 37530085 - 37530212
Alignment:
Q  24 atctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacac 123  Q
    ||||| ||| ||||||| |||||||| || |  |||| ||||||||| ||||| |||||||||| | ||||| |||   |||||||| || ||||| |||    
T  37530085 atcttaacacaaaaccttaaggcattggatacatggaacatctcatt-atatgctgttgaaaattttctcttccatccgatgtagaatgtcaactcgcac 37530183  T
Q  124 ttgacacattaacatctattaatcaagtg 152  Q
    ||||||||||||||||| ||||| |||||    
T  37530184 ttgacacattaacatctcttaatgaagtg 37530212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 316576 - 316508
Alignment:
Q  70 ttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacat 138  Q
    |||||||||| | ||||||||||||||||| ||||||| ||  ||||||| || |||||||||||||||    
T  316576 ttatatgttgctcaaaatctactctttcatctaatgtataattttaactcgcatttgacacattaacat 316508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 6559958 - 6559827
Alignment:
Q  7 aatgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgt 106  Q
    |||||||| |||| |||| ||| |||  |||||| |||  |||||| |||| |  ||||| | |||||||||| | ||||||||||||| ||| |||| |    
T  6559958 aatgagattgacaccacagcttcacatgaaaccttaagatattagatattttggtcatctgacttatatgttgctcaaaatctactcttccatctaatct 6559859  T
Q  107 agaaggttaactcacacttgacacattaacat 138  Q
    | || |||||||| || |||||||||||||||    
T  6559858 ataacgttaactcgcatttgacacattaacat 6559827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 48683583 - 48683524
Alignment:
Q  45 gcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaat 104  Q
    |||||||| || |||| |||||||| ||||||||||| ||||| ||||||||||| ||||    
T  48683583 gcattagatatatggatcatctcatctatatgttgttcaaaatatactctttcatttaat 48683524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 285180 - 285103
Alignment:
Q  63 atctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatct 140  Q
    |||||| ||| |||||||| ||||||||||||| |||  ||  |||||| ||||||| ||| |||| |||||||||||    
T  285180 atctcacttacatgttgtttaaaatctactcttgcatccaacctagaagtttaactctcacatgacgcattaacatct 285103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 55052032 - 55051911
Alignment:
Q  9 tgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatg-ttgttgaaaatctactctttcatgtaatgta 107  Q
    |||||| |||| | |||||||| | ||||||| |||||||||||||| ||   ||||||| ||||||| || || ||||| ||||| | |||  ||||||    
T  55052032 tgagattgacaccgcatctttagataaaaccttaaggcattagacatatgagtcatctcacttatatgttttttcaaaatatactcatccatccaatgta 55051933  T
Q  108 gaaggttaactcacacttgaca 129  Q
    ||  | ||||||||||||||||    
T  55051932 gagtgctaactcacacttgaca 55051911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 4236391 - 4236451
Alignment:
Q  113 ttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctgtaa 173  Q
    |||| |||||||||| |||| ||||| | |||||||| ||||| ||| |||||||||||||    
T  4236391 ttaattcacacttgatacatcaacatttgttaatcaattgtgtaactctccacgtctgtaa 4236451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 4279722 - 4279782
Alignment:
Q  113 ttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctgtaa 173  Q
    |||| |||||||||| |||| ||||| | |||||||| ||||| ||| |||||||||||||    
T  4279722 ttaattcacacttgatacatcaacatttgttaatcaattgtgtaactctccacgtctgtaa 4279782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 42727175 - 42727251
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacat 138  Q
    |||||||  |||||||| || || |||||||| ||||| || |||||||  |||||||| | |||||||||||||||    
T  42727175 catctcacatatatgttattcaatatctactcattcatctattgtagaactttaactcatatttgacacattaacat 42727251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 52542093 - 52542160
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgta--atgtagaaggttaactcacacttga 127  Q
    |||||||||| ||| ||| | |||||||||||||||||  |  |||||||| ||||||||||||||||    
T  52542093 catctcatttctatcttgatcaaaatctactctttcatccaatatgtagaatgttaactcacacttga 52542160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 15878964 - 15878817
Alignment:
Q  21 cacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactca 120  Q
    |||||||||||| ||||||| ||| |||||    ||| |  ||||||| |||||||||||| ||||||||||||| |||  |||||| || |||||||||    
T  15878964 cacatctttacagaaaaccttaagacattatgtgtttcggtcatctcaattatatgttgttcaaaatctactcttccatccaatgtataacgttaactca 15878865  T
Q  121 cacttgacacattaacatctattaatcaagtgtgtgactatccacgtc 168  Q
    || ||||||||||||||| |  |||| || |||||||||||| |||||    
T  15878864 catttgacacattaacatatcctaatgaattgtgtgactatctacgtc 15878817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 9449611 - 9449701
Alignment:
Q  64 tctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtg 154  Q
    ||||| ||||||||| || ||||| ||||| | |||  ||||||||| | ||||||||||||||||| ||||||||| |||||||||||||    
T  9449611 tctcacttatatgtttttcaaaatatactcatccatccaatgtagaatggtaactcacacttgacacgttaacatctcttaatcaagtgtg 9449701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 4852889 - 4852811
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatct 140  Q
    ||||||| | |||||||||| || | |||||| | |||  |||||||||||||||||||||| ||||||||||||||||    
T  4852889 catctcactaatatgttgtttaacaactactcctgcatccaatgtagaaggttaactcacacatgacacattaacatct 4852811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 11554389 - 11554467
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatct 140  Q
    ||||||| | |||||||||| || | |||||| | |||  |||||||||||||||||||||| ||||||||||||||||    
T  11554389 catctcactaatatgttgtttaacaactactcctgcatccaatgtagaaggttaactcacacatgacacattaacatct 11554467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 10191152 - 10191104
Alignment:
Q  113 ttaactcacacttgacacattaacatctattaatcaagtgtgtgactat 161  Q
    ||||||||||||||| |||||||||||| ||||||||||||| ||||||    
T  10191152 ttaactcacacttgatacattaacatcttttaatcaagtgtgcgactat 10191104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 1599922 - 1599848
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaac 136  Q
    |||||||||||||||||| | || |||||||||| ||| ||||||| ||| |||| | |||| ||||||||||||    
T  1599922 catctcatttatatgttgctcaatatctactcttacatataatgtataagtttaaatgacacatgacacattaac 1599848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 24397996 - 24397919
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatct 140  Q
    |||||||||||||||||| | || || ||||  ||| | ||||||||||| ||||||||||| ||||||||||| ||||    
T  24397996 catctcatttatatgttgctcaatatatactaattcgtctaatgtagaag-ttaactcacacatgacacattaatatct 24397919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 18089938 - 18090067
Alignment:
Q  9 tgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtag 108  Q
    |||||| |||| |||||||| ||  ||||||| ||||||||||  || | |  ||||||| |||||||||  |||| ||||||||||||| | ||| |||    
T  18089938 tgagattgacaccacatcttcacccaaaaccttaaggcattaggtatattgttcatctcaattatatgtttctgaacatctactctttcaaggaatatag 18090037  T
Q  109 aaggttaactcacacttgacacattaacat 138  Q
    ||  |||| | ||| |||||| ||||||||    
T  18090038 aactttaagtgacaattgacatattaacat 18090067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 2953225 - 2953185
Alignment:
Q  113 ttaactcacacttgacacattaacatctattaatcaagtgt 153  Q
    |||||||||||||||||||  ||||||||| ||||||||||    
T  2953225 ttaactcacacttgacacaacaacatctatcaatcaagtgt 2953185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 3008216 - 3008310
Alignment:
Q  63 atctcatttatatgttgttgaaaatctactctttcatgtaat--gtagaaggttaactcacacttgacacattaacatctattaatcaagtgtgt 155  Q
    ||||||||||||||||| | |||||||||||||||||  |||  |||||| ||||||||||||||||||| ||||||| | ||||||||| ||||    
T  3008216 atctcatttatatgttgatcaaaatctactctttcatcaaatacgtagaacgttaactcacacttgacacgttaacatattttaatcaagcgtgt 3008310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 3009391 - 3009489
Alignment:
Q  57 tggaccatctcatttatatgttgttgaaaatctactctttcatgtaat--gtagaaggttaactcacacttgacacattaacatctattaatcaagtgt 153  Q
    |||| ||| |||||||||||||| | |||||||||| ||||||  |||  |||||| |||||||||||||||||||||||  || | ||||||||||||    
T  3009391 tggatcatttcatttatatgttgatcaaaatctactttttcatccaatatgtagaacgttaactcacacttgacacattattatattttaatcaagtgt 3009489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 11769770 - 11769859
Alignment:
Q  65 ctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtg 154  Q
    |||| |||| ||||| | ||||||||||||| |||  ||| | |||  |||||| | ||||||||||||||||||| |||||||||||||    
T  11769770 ctcagttatgtgttgatcaaaatctactcttccatccaattttgaactttaactaatacttgacacattaacatctcttaatcaagtgtg 11769859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 9025033 - 9024946
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaa 149  Q
    ||||||| ||||||||| || |||||||||||||  ||  | | || ||  |||||||||||||||||||||||||||| ||| ||||    
T  9025033 catctcacttatatgttattcaaaatctactcttctatccactatataattttaactcacacttgacacattaacatctcttattcaa 9024946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 4064140 - 4064019
Alignment:
Q  9 tgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatg-ttgttgaaaatctactctttcatgtaatgta 107  Q
    |||||| |||| | |||||||| | ||||||| |||||||||||||| ||   ||||||| ||||||| || || ||||| ||||| | |||  ||||||    
T  4064140 tgagattgacaccgcatctttagataaaaccttaaggcattagacatatgagtcatctcacttatatgttttttcaaaatatactcatccatccaatgta 4064041  T
Q  108 gaaggttaactcacacttgaca 129  Q
    ||  | ||||||||||||||||    
T  4064040 gagtggtaactcacacttgaca 4064019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 20779695 - 20779566
Alignment:
Q  9 tgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtag 108  Q
    |||||| |||| ||||| |||||| ||||||| ||| |||||   |||| |  ||||||| |||||||||||| ||||||||||||| |||  | ||||     
T  20779695 tgagattgacaccacatatttacataaaacctcaagacattatgtatttcggtcatctcacttatatgttgttcaaaatctactcttccatccagtgtat 20779596  T
Q  109 aaggttaactcacacttgacacattaacat 138  Q
    || ||||||||||| |||||||||||||||    
T  20779595 aatgttaactcacatttgacacattaacat 20779566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 10020194 - 10020102
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtg 154  Q
    ||||||| |||||||||||| ||||||||| ||| |||  ||| |||||   ||| |||||||||| || |||||||||||||||||||||||    
T  10020194 catctcacttatatgttgttcaaaatctacccttccattcaatatagaactctaaatcacacttgatacgttaacatctattaatcaagtgtg 10020102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 40416347 - 40416275
Alignment:
Q  89 tactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtgtgactat 161  Q
    |||| ||||||  ||||||||| || |||||| |||| |||||||||||||| ||||||||||||||||||||    
T  40416347 tactatttcatccaatgtagaacgtcaactcatacttaacacattaacatctcttaatcaagtgtgtgactat 40416275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 10021155 - 10021092
Alignment:
Q  102 aatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccac 165  Q
    ||||||||| || |||||||||||||| ||||||||||| || |||||||||| ||||||||||    
T  10021155 aatgtagaacgtaaactcacacttgactcattaacatctctttatcaagtgtgcgactatccac 10021092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 32971201 - 32971266
Alignment:
Q  102 aatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgt 167  Q
    ||||||||| || |||||||||||||| ||||||||||  || |||||||||| ||||||||||||    
T  32971201 aatgtagaacgtaaactcacacttgactcattaacatcgctttatcaagtgtgcgactatccacgt 32971266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 51134 - 51083
Alignment:
Q  113 ttaactcacacttgacacattaacatctattaatcaagtgtgtgactatcca 164  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||| ||||    
T  51134 ttaagtcacacttgacagattaacatcttttaatcaagtgtgtgactctcca 51083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 10021874 - 10021811
Alignment:
Q  102 aatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccac 165  Q
    ||||||||| || |||||||||||||| ||||||||||| || |||||||||  ||||||||||    
T  10021874 aatgtagaacgtaaactcacacttgactcattaacatctctttatcaagtgttcgactatccac 10021811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 18290421 - 18290571
Alignment:
Q  9 tgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtag 108  Q
    |||||| |||| |||||||||||| ||||||| ||| |||||   |||| |  ||||||| |||||||||||| ||||||||||||| |||  | ||||     
T  18290421 tgagattgacaccacatctttacataaaaccttaagacattatgtatttcggtcatctcacttatatgttgtttaaaatctactcttccatccagtgtat 18290520  T
Q  109 aaggttaactcacacttgacacattaacatctattaatcaagtgtgtgact 159  Q
    |  ||||||||||| ||| ||||| ||||| |  ||||||| |||||||||    
T  18290521 accgttaactcacatttgtcacatcaacatatcctaatcaattgtgtgact 18290571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 36837376 - 36837445
Alignment:
Q  113 ttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctgtaagtatgtgac 182  Q
    |||||| |||||| |||||||||||||| |||||||||||| ||| | || |||||||||| ||||||||    
T  36837376 ttaactaacacttaacacattaacatctcttaatcaagtgtttgattctctacgtctgtaattatgtgac 36837445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 6678296 - 6678437
Alignment:
Q  7 aatgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgt 106  Q
    ||||||||  |||| ||||||| ||| ||||||| || ||||| |  || |||||||| |||||||||||||||| |||||||| | || |||  ||||     
T  6678296 aatgagatttacattacatcttcacacaaaaccttaatgcatttgctatatggaccatgtcatttatatgttgttaaaaatctatttttccatccaatgc 6678395  T
Q  107 agaaggttaactcacacttgacacattaacatctattaatca 148  Q
    | ||  |||||||| | ||||||||  ||||||| |||||||    
T  6678396 aaaacattaactcataattgacacaccaacatctgttaatca 6678437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 42078961 - 42079041
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgta--gaaggttaactcacacttgacacattaacatct 140  Q
    ||||||| ||| |||||| | || |||||||||| |||  ||||||  |||| ||||||||||| ||||||||||||||||    
T  42078961 catctcacttacatgttgctcaatatctactcttgcatcaaatgtatagaagtttaactcacacatgacacattaacatct 42079041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 43989719 - 43989679
Alignment:
Q  113 ttaactcacacttgacacattaacatctattaatcaagtgt 153  Q
    |||||||||||||||||||||||||||| | ||| ||||||    
T  43989719 ttaactcacacttgacacattaacatctctcaattaagtgt 43989679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 28963613 - 28963486
Alignment:
Q  24 atctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacac 123  Q
    ||||| ||| ||||||| |||||||| || |  |||| ||||||||| ||||| |||||||||| | ||||| |||   |||||||| || ||||| |||    
T  28963613 atcttaacacaaaaccttaaggcattggatacatggaacatctcatt-atatgctgttgaaaattttctcttccatccgatgtagaatgtcaactcgcac 28963515  T
Q  124 ttgacacattaacatctattaatcaagtg 152  Q
    ||||||||||||||||| ||||| |||||    
T  28963514 ttgacacattaacatctcttaatgaagtg 28963486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 3982759 - 3982724
Alignment:
Q  113 ttaactcacacttgacacattaacatctattaatca 148  Q
    |||||||||||||||||||||||||||| |||||||    
T  3982759 ttaactcacacttgacacattaacatctcttaatca 3982724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 143
Target Start/End: Complemental strand, 47783183 - 47783153
Alignment:
Q  113 ttaactcacacttgacacattaacatctatt 143  Q
    |||||||||||||||||||||||||||||||    
T  47783183 ttaactcacacttgacacattaacatctatt 47783153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 31089550 - 31089618
Alignment:
Q  70 ttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacat 138  Q
    |||||||||| | ||||| |||||||||||  |||||||||  |||||| |||  ||||||||||||||    
T  31089550 ttatatgttgctcaaaatatactctttcatccaatgtagaaatttaacttacatatgacacattaacat 31089618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 49882787 - 49882679
Alignment:
Q  71 tatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctg 170  Q
    ||||||||| | |||||||||| || |||  | |||| || ||||||||  | ||||||||||||||| |  ||||||| |||||| ||||| ||||| |    
T  49882787 tatatgttgctcaaaatctactattccatccattgtataacgttaactcgtatttgacacattaacatatcctaatcaattgtgtgtctatctacgtccg 49882688  T
Q  171 taagtatgt 179  Q
    ||| |||||    
T  49882687 taattatgt 49882679  T

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Target: scaffold2049 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold2049
Description:

Target: scaffold2049; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 212 - 342
Alignment:
Q  21 cacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactca 120  Q
    ||||| || ||| ||||||| |||||||| || |  | || ||||||||| |||||||||||||||| | ||||| |||   |||||||| || ||||||    
T  212 cacattttaacacaaaaccttaaggcattggatacatcgaacatctcatt-atatgttgttgaaaattttctcttccatccgatgtagaatgtcaactca 310  T
Q  121 cacttgacacattaacatctattaatcaagtg 152  Q
    |||||| ||||||||||||| ||||| |||||    
T  311 cacttggcacattaacatctcttaatgaagtg 342  T

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Target: scaffold0012 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 94714 - 94844
Alignment:
Q  21 cacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactca 120  Q
    ||||| || ||| ||||||| |||||||| || |  | || ||||||||| |||||||||||||||| | ||||| |||   |||||||| || ||||||    
T  94714 cacattttaacacaaaaccttaaggcattggatacatcgaacatctcatt-atatgttgttgaaaattttctcttccatccgatgtagaatgtcaactca 94812  T
Q  121 cacttgacacattaacatctattaatcaagtg 152  Q
    |||||| ||||||||||||| ||||| |||||    
T  94813 cacttggcacattaacatctcttaatgaagtg 94844  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 20106611 - 20106738
Alignment:
Q  11 agatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtagaa 110  Q
    |||| |||| ||||| |||||| ||||||| ||| |||||   |||| |  ||||||| |||||| || || ||||||||||||| |||  |||||| ||    
T  20106611 agattgacaccacatatttacataaaaccttaagacattatgtattttggtcatctcacttatattttattcaaaatctactcttccatccaatgtataa 20106710  T
Q  111 ggttaactcacacttgacacattaacat 138  Q
     ||||||||||| |||||||||||||||    
T  20106711 cgttaactcacatttgacacattaacat 20106738  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 31963709 - 31963777
Alignment:
Q  70 ttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacat 138  Q
    |||||||||| | ||||||||||||| ||| ||||||| || |||||||| || |||||||||||||||    
T  31963709 ttatatgttgctcaaaatctactcttccatctaatgtataaagttaactcgcatttgacacattaacat 31963777  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 5788097 - 5788171
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaac 136  Q
    ||||||| |||||||||| | || || ||||||| ||| ||||||||||| |||| |||||| ||||||||||||    
T  5788097 catctcacttatatgttgctcaatatatactcttacatataatgtagaagtttaaatcacacgtgacacattaac 5788171  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 14905171 - 14905101
Alignment:
Q  70 ttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctat 142  Q
    ||||||||||||  ||||||||||||||||  ||| || ||  |||||||||||||||||||| |||||||||    
T  14905171 ttatatgttgtt--aaatctactctttcatccaatataaaactttaactcacacttgacacatcaacatctat 14905101  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 31965846 - 31965935
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagt 151  Q
    ||||||| ||||||||| || |||||||||||||  || || | |||||  |||||||| ||||||||||||||| ||| ||| ||||||    
T  31965846 catctcacttatatgttattcaaaatctactcttctatctactatagaattttaactcatacttgacacattaacttctcttattcaagt 31965935  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 17680963 - 17681003
Alignment:
Q  113 ttaactcacacttgacacattaacatctattaatcaagtgt 153  Q
    ||||||||||||||| |||||||||||| ||||||||||||    
T  17680963 ttaactcacacttgatacattaacatcttttaatcaagtgt 17681003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 41754007 - 41754081
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaac 136  Q
    ||||||| |||||||||| | || |||||||||| ||| ||||||| ||| |||| | |||| ||||||||||||    
T  41754007 catctcacttatatgttgctcaatatctactcttacatataatgtataagtttaaatgacacatgacacattaac 41754081  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 45661183 - 45661109
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaac 136  Q
    ||||||| |||||||||| | || || ||||||| |||  |||||| ||||||||||||||| || |||||||||    
T  45661183 catctcacttatatgttgcttaatatttactcttgcatcaaatgtaaaaggttaactcacacatgtcacattaac 45661109  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 36720112 - 36720076
Alignment:
Q  104 tgtagaaggttaactcacacttgacacattaacatct 140  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36720112 tgtagaattttaactcacacttgacacattaacatct 36720076  T

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Target: scaffold0114 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 37121 - 37032
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagt 151  Q
    ||||||| ||||||||| || |||||||||||||  ||  | | |||||  |||||||||||||||||||||||||||| ||| ||||||    
T  37121 catctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaacatctcttattcaagt 37032  T

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Target: scaffold0114; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 1449 - 1350
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtgtgactat 161  Q
    ||||||| |||||| || || |||||||| |||| |||  ||||| |||  || |||||||||||||||||||  |||| |||||||| ||||||| |||    
T  1449 catctcacttatatattattcaaaatctattcttccattcaatgttgaacattcactcacacttgacacatta--atctcttaatcaaatgtgtgattat 1352  T

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Target: scaffold0284 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 7537 - 7668
Alignment:
Q  7 aatgagatggacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgt 106  Q
    |||||||| |||| |||| ||| |||  |||||| ||| ||||||  |||| |  ||||| | |||||||||| | ||||||||||||| |||  |||||    
T  7537 aatgagattgacaccacaacttcacatgaaaccttaagacattaggtattttggtcatctaacttatatgttgctcaaaatctactcttccatccaatgt 7636  T
Q  107 agaaggttaactcacacttgacacattaacat 138  Q
    | || |||||||| || |||||||||||||||    
T  7637 ataacgttaactcgcatttgacacattaacat 7668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 18337 - 18270
Alignment:
Q  114 taactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctgtaagtatgtga 181  Q
    ||||| ||||||||||||||||||| | |||||||||||||  ||||||||| | ||||| |||||||    
T  18337 taactaacacttgacacattaacatatcttaatcaagtgtgctactatccacatttgtaattatgtga 18270  T

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Target: scaffold0159 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 32470 - 32544
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaac 136  Q
    ||||||| |||||||||| | || || ||||||| ||| ||||||||||| |||| |||||| ||||||||||||    
T  32470 catctcacttatatgttgctcaatatatactcttacatataatgtagaagtttaaatcacacgtgacacattaac 32544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 43712 - 43666
Alignment:
Q  103 atgtagaaggttaactcacacttgacacattaacatctattaatcaa 149  Q
    |||||||| ||||||||||||||||||||||||||| | ||||||||    
T  43712 atgtagaacgttaactcacacttgacacattaacatattttaatcaa 43666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 15343 - 15272
Alignment:
Q  65 ctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaac 136  Q
    |||| |||||||||| | || |||||||| | ||| ||||||| ||| |||| |||||||||||||||||||    
T  15343 ctcacttatatgttgctcaatatctactcatacatataatgtaaaagtttaaatcacacttgacacattaac 15272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 18458 - 18547
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagt 151  Q
    ||||||| ||||||||| || |||||||||||||  ||  | | |||||  ||||||||||||||||  |||||||||| ||| ||||||    
T  18458 catctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgactaattaacatctcttattcaagt 18547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1345 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 1885 - 1845
Alignment:
Q  113 ttaactcacacttgacacattaacatctattaatcaagtgt 153  Q
    |||||||||||||||||||||||||||| | ||| ||||||    
T  1885 ttaactcacacttgacacattaacatctctcaattaagtgt 1845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 29169 - 29245
Alignment:
Q  62 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacat 138  Q
    ||||||| |||||||||||| || ||||||| || |||  ||||| |||  |||||||||| |||| ||||||||||    
T  29169 catctcacttatatgttgtttaacatctacttttgcatccaatgtggaactttaactcacatttgatacattaacat 29245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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