View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_415 (Length: 224)
Name: NF9913A_low_415
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_415 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 20455965 - 20455742
Alignment:
| Q |
1 |
ggacttctgccgttttaactagagttcatgcaaccaatgataaaatacatgaaatatgaatagatatcattaaggannnnnnnnnnnnnnnnctgaggaa |
100 |
Q |
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| T |
20455965 |
ggacttttgccgttttaactagagttcatgcaaccaatgataaaatacatgaaatatgaatagatatcattaaggaacacacacgcacacacctgaggaa |
20455866 |
T |
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| Q |
101 |
taactcgaccgggcttgatggttttatcttgtcgaagagttgatgaagtaatgatctcatgagagaagaaatcaactggcggcgtaggtggcttgttctt |
200 |
Q |
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| T |
20455865 |
taactcgccggggcttgatggttttatcttgtcgaagagttgatgaagtaatgatctcatgagagaagaaatcaactggcggcgtaggtggcttgttctt |
20455766 |
T |
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| Q |
201 |
gaaagctagaattctggtcctgtt |
224 |
Q |
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| T |
20455765 |
aaaagctagaattctggtcctgtt |
20455742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 93 - 224
Target Start/End: Complemental strand, 1631941 - 1631816
Alignment:
| Q |
93 |
ctgaggaataactcgaccgggcttgatggttttatcttgtcgaagagttgatgaagtaatgatctcatgagagaagaaatcaactggcggcgtaggtggc |
192 |
Q |
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||||||||||| ||| | |||||| ||||||||||||| | |||||| ||||||||||| ||||||| | |||||||||| | |||||||| |
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| T |
1631941 |
ctgaggaataattcgcctgggctttatggttttatcttcttgaagagatgatgaagtaagt---tcatgaggaatcgaatcaactggag---taggtggc |
1631848 |
T |
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| Q |
193 |
ttgttcttgaaagctagaattctggtcctgtt |
224 |
Q |
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| T |
1631847 |
ttgttcttgaaagctagaattctggtcctgtt |
1631816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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