View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_416 (Length: 224)
Name: NF9913A_low_416
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_416 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 30810322 - 30810502
Alignment:
| Q |
19 |
cacaatctcccctcacattaaatgtgtatgtctacccctcttcatctactatattatata--aatacatagttaccttcaaatttcttttacactataaa |
116 |
Q |
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| T |
30810322 |
cacaatctcccctcacattaaatgtgtatgtctacctctcttcatctactatattatatataaatacaaagttaccttcaaatttcttttacactataaa |
30810421 |
T |
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| Q |
117 |
aactct--tcaacatttatttacttattctatcttcaatattcattagtccttcttttaacaaatgattatagtattatat |
195 |
Q |
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| T |
30810422 |
aactctattcaacatttatttacttattctatcttcaatattgattagtccttcttttaacaaatgattataatataatat |
30810502 |
T |
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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 30820124 - 30820182
Alignment:
| Q |
137 |
cttattctatcttcaatattcattagtccttcttttaacaaatgattatagtattatat |
195 |
Q |
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| T |
30820124 |
cttattcgaacttcaatattgattggtccttcttttaacaaatgactataatataatat |
30820182 |
T |
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