View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_419 (Length: 224)
Name: NF9913A_low_419
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_419 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 28908152 - 28908375
Alignment:
| Q |
1 |
aactccaaataaaaaattgtaaatggcaaaactacaggtgtcagtgtcagagtaggtgcttcatagattctaaggataaaaatttatgaccatgtgcaac |
100 |
Q |
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| T |
28908152 |
aactccaaataaaaaaatgtaaatggcaaaactacaggtgtcagtgtcagagtaggtgcttcatagattctaaggataaaaatttatgaccatgtgcaac |
28908251 |
T |
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| Q |
101 |
taacgaagttacagggctgcaaccaatttaagagattttacctcactttctacaggtaataaacttctaacatcattctgctcgaaacgggaagcaatca |
200 |
Q |
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| T |
28908252 |
taacgaagttacagggctgcaaccaatttaagagattttacctcactttctacaggtaataaacttctaacatcattctgctcgaaacgggaagcaatca |
28908351 |
T |
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| Q |
201 |
gctggcctcctgcagctagccatg |
224 |
Q |
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| T |
28908352 |
gctggcctcctgcagctagccatg |
28908375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 11847897 - 11847813
Alignment:
| Q |
140 |
acctcactttctacaggtaataaacttctaacatcattctgctcgaaacgggaagcaatcagctggcctcctgcagctagccatg |
224 |
Q |
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||||||||||||||||||| ||| |||| |||||||| ||||| ||||||||||||||||||||||||||| | ||||||||| |
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| T |
11847897 |
acctcactttctacaggtagtaagcttcgaacatcatgttgctcaaaacgggaagcaatcagctggcctccttcgcctagccatg |
11847813 |
T |
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