View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_430 (Length: 222)
Name: NF9913A_low_430
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_430 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 6185768 - 6185950
Alignment:
| Q |
20 |
gttgtctccttcatgtcctagcttttcgtctgagacttctgtacacgctaaagcgatgcaacgaagactactagctgccataccttgaataatgctttcg |
119 |
Q |
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| T |
6185768 |
gttgtctccttcatgtcctagcttttcgtctgagacttctgtacacgctaaagcgatgcaacgaagactactagctgccataccttgaataatgctttcg |
6185867 |
T |
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| Q |
120 |
aatttcagcatagattcattgtcaagatctttcaaaattccataaccatcatagtatcttgaacacattcttagtaccatctc |
202 |
Q |
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| T |
6185868 |
aatttcagcatagattcattgtcaagatctttcaaaattccataaccatcatagtatcttgaacacattcttagtaccatctc |
6185950 |
T |
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Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 39 - 206
Target Start/End: Original strand, 4236694 - 4236861
Alignment:
| Q |
39 |
agcttttcgtctgagacttctgtacacgctaaagcgatgcaacgaagactactagctgccataccttgaataatgctttcgaatttcagcatagattcat |
138 |
Q |
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| T |
4236694 |
agctcttcgtctgtaacttttgtatacgctaaagcgatgcaacgaagactactagccgccataccttgaataatcctttcgaatttcaacatggtttcat |
4236793 |
T |
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| Q |
139 |
tgtcaagatctttcaaaattccataaccatcatagtatcttgaacacattcttagtaccatctctgct |
206 |
Q |
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| T |
4236794 |
tgtcaagatctttcgaaattccaaaaccatcatggtattttgaacacattcttagtaccatctctgct |
4236861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 21847622 - 21847712
Alignment:
| Q |
116 |
ttcgaatttcagcatagattcattgtcaagatctttcaaaattccataaccatcatagtatcttgaacacattcttagtaccatctctgct |
206 |
Q |
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| T |
21847622 |
ttcgaatttcaacatagatccattgtcaagatctttcaaaattccacagccaatgtaatatcttgaacacattcttagtaccatctctgct |
21847712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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