View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_432 (Length: 222)
Name: NF9913A_low_432
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_432 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 34585848 - 34586044
Alignment:
| Q |
9 |
gagatggacatcatccgagttgctcagaactacacccaaacctgcttgcaacctcccacaggcccgccttactgaaggtgctatacattgacttcctttt |
108 |
Q |
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| T |
34585848 |
gagatagacataatccgagttgctcagaactacacccaaacctgcttgcaacctcccacaggcccgccttactgaaagtgctatacattgacttcctttt |
34585947 |
T |
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| Q |
109 |
cggccttttgtactgtccttcatcaacaccagcttcaccgggtgggaaatgtacgttgaacttggaatcaacatcgtcaacctccctctctgattct |
205 |
Q |
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| T |
34585948 |
cggccttttgtactgtccttcatcaacaccagcttcaccaggtgggaaatgtacattgaacttggaatcaacatcgtcaacctccctctctgattct |
34586044 |
T |
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Target: chr7; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 9 - 205
Target Start/End: Complemental strand, 34041118 - 34040925
Alignment:
| Q |
9 |
gagatggacatcatccgagttgctcagaactacacccaaacctgcttgcaacctcccacaggcccgccttactgaaggtgctatacattgacttcctttt |
108 |
Q |
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||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
34041118 |
gagatagacataatccgagttgctcagaactacacccaaatctgcttgcaacctcccacagacctgccttactgaaagtgctatacattgacttcctttt |
34041019 |
T |
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| Q |
109 |
cggccttttgtactgtccttcatcaacaccagcttcaccgggtgggaaatgtacgttgaacttggaatcaacatcgtcaacctccctctctgattct |
205 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34041018 |
tggccttttgtactgtc---catcaacaccagcttcacctggtggaaaatgtaagttgaacttggagtcaacatcgtcaacctccctctctgattct |
34040925 |
T |
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