View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_434 (Length: 222)

Name: NF9913A_low_434
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_434
NF9913A_low_434
[»] chr4 (13 HSPs)
chr4 (11-222)||(11150318-11150528)
chr4 (15-222)||(25127291-25127498)
chr4 (11-222)||(15703433-15703643)
chr4 (10-222)||(23972837-23973049)
chr4 (10-221)||(14644616-14644826)
chr4 (13-222)||(4529782-4529989)
chr4 (15-140)||(19612930-19613056)
chr4 (101-222)||(18875044-18875161)
chr4 (95-152)||(20770653-20770710)
chr4 (24-117)||(12385288-12385382)
chr4 (14-51)||(9565036-9565073)
chr4 (101-141)||(15691335-15691376)
chr4 (101-145)||(9609818-9609862)
[»] chr3 (11 HSPs)
chr3 (11-222)||(3472912-3473122)
chr3 (11-222)||(18539220-18539432)
chr3 (11-144)||(3586037-3586170)
chr3 (98-222)||(39728849-39728972)
chr3 (11-106)||(39728206-39728300)
chr3 (53-138)||(15778350-15778435)
chr3 (101-222)||(18694761-18694881)
chr3 (101-222)||(18710280-18710400)
chr3 (127-222)||(19595718-19595813)
chr3 (101-181)||(3289496-3289575)
chr3 (15-57)||(3475798-3475840)
[»] scaffold0281 (1 HSPs)
scaffold0281 (11-222)||(571-782)
[»] chr7 (12 HSPs)
chr7 (11-222)||(11509746-11509956)
chr7 (11-222)||(18148734-18148944)
chr7 (15-222)||(22530124-22530331)
chr7 (12-222)||(34705773-34705977)
chr7 (53-222)||(21860584-21860751)
chr7 (108-213)||(13694170-13694274)
chr7 (64-159)||(3377724-3377820)
chr7 (53-129)||(21501014-21501091)
chr7 (70-126)||(6019275-6019331)
chr7 (75-123)||(13386703-13386750)
chr7 (75-123)||(19193977-19194024)
chr7 (70-121)||(21498551-21498603)
[»] chr5 (7 HSPs)
chr5 (10-215)||(39437067-39437271)
chr5 (64-137)||(29497057-29497130)
chr5 (75-123)||(27273153-27273200)
chr5 (76-123)||(19049409-19049455)
chr5 (109-140)||(32039818-32039849)
chr5 (11-49)||(29497017-29497055)
chr5 (11-43)||(889872-889904)
[»] chr8 (7 HSPs)
chr8 (11-222)||(9882239-9882450)
chr8 (14-222)||(40387505-40387712)
chr8 (10-135)||(1216744-1216869)
chr8 (11-184)||(42145381-42145554)
chr8 (101-140)||(17289632-17289671)
chr8 (8-37)||(17289761-17289790)
chr8 (152-221)||(42145310-42145378)
[»] chr1 (9 HSPs)
chr1 (14-222)||(52272645-52272852)
chr1 (14-185)||(12785022-12785199)
chr1 (14-140)||(41138001-41138127)
chr1 (10-140)||(9132516-9132647)
chr1 (10-140)||(23633267-23633398)
chr1 (101-212)||(89878-89988)
chr1 (101-185)||(18249887-18249972)
chr1 (85-136)||(19474425-19474476)
chr1 (135-222)||(18514938-18515026)
[»] chr6 (9 HSPs)
chr6 (11-185)||(19770139-19770312)
chr6 (11-222)||(19891702-19891910)
chr6 (10-222)||(9547629-9547840)
chr6 (11-146)||(22468810-22468952)
chr6 (53-122)||(12876106-12876176)
chr6 (101-140)||(19565277-19565316)
chr6 (101-140)||(20738946-20738985)
chr6 (87-124)||(17729507-17729544)
chr6 (11-51)||(19565160-19565200)
[»] scaffold0005 (1 HSPs)
scaffold0005 (10-221)||(172466-172676)
[»] scaffold0024 (1 HSPs)
scaffold0024 (16-222)||(106680-106885)
[»] scaffold0323 (1 HSPs)
scaffold0323 (10-147)||(15300-15437)
[»] chr2 (11 HSPs)
chr2 (10-140)||(16092412-16092543)
chr2 (14-140)||(20264687-20264813)
chr2 (101-222)||(32625541-32625661)
chr2 (110-222)||(34892184-34892295)
chr2 (53-140)||(38991701-38991788)
chr2 (14-128)||(27401699-27401814)
chr2 (108-185)||(20178635-20178711)
chr2 (53-140)||(22385814-22385899)
chr2 (72-129)||(30613270-30613327)
chr2 (87-130)||(29890519-29890563)
chr2 (70-145)||(19467084-19467160)
[»] scaffold0498 (2 HSPs)
scaffold0498 (101-218)||(12023-12139)
scaffold0498 (15-105)||(9784-9875)
[»] scaffold0449 (1 HSPs)
scaffold0449 (11-95)||(344-429)
[»] scaffold0009 (1 HSPs)
scaffold0009 (101-160)||(221835-221894)
[»] scaffold0043 (1 HSPs)
scaffold0043 (68-140)||(66678-66752)
[»] scaffold0196 (1 HSPs)
scaffold0196 (101-129)||(22871-22899)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 11150528 - 11150318
Alignment:
Q  11 ttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  11150528 ttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataactctgatatccaaaaccggtacaacat 11150429  T
Q  111 gcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattattta 210  Q
    ||||||||||||||||||| |||||||||| |||||||| | |||||||| ||||||||||||||||||||||||||| |||||||||||||  ||||||    
T  11150428 gcatatagagtcgagttagagacattgcatacataactgtaggtctattt-gaagatgtgtaattaaaagatgtgatattttaagatgtgtacctattta 11150330  T
Q  211 aagatgtgatat 222  Q
    || |||||||||    
T  11150329 aatatgtgatat 11150318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 25127291 - 25127498
Alignment:
Q  15 tgttcatgcattcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacatgca 113  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25127291 tgttcatgcattcatggtcagtccgatttaaagatgtgatttaaagatgggggataaatcagtaacataactctgatatccaaaaccggtaccacatgca 25127390  T
Q  114 tatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattatttaaag 213  Q
    ||| |||||||||||| |||||||||| |||||||| | |||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  25127391 tattgagtcgagttagagacattgcatacataactgtaggtctattt-gaagatgtgtaattaaaagatgtgatattttaagatgtgtaactatttaaag 25127489  T
Q  214 atgtgatat 222  Q
    |||||||||    
T  25127490 atgtgatat 25127498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 15703643 - 15703433
Alignment:
Q  11 ttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||    
T  15703643 ttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataactctgatatctaaaatcggtaccacat 15703544  T
Q  111 gcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattattta 210  Q
    | ||||||||||||||||| |||||||||| ||||| || | |||||||| ||||||||||||||||||||||||||| |||||||||||||  ||||||    
T  15703543 gtatatagagtcgagttagagacattgcatacataattgtaggtctattt-gaagatgtgtaattaaaagatgtgatattttaagatgtgtacctattta 15703445  T
Q  211 aagatgtgatat 222  Q
    ||||||||||||    
T  15703444 aagatgtgatat 15703433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 23973049 - 23972837
Alignment:
Q  10 tttggtgttcatgcattcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  23973049 tttggtgttcatgcattcatggtcagtccgatttaaagatgtgatttaaagatgggggataattcagtaacataactctgatatccaaaactggtaccac 23972950  T
Q  109 atgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattatt 208  Q
    ||||||||||||||||||||| |||||||||| |||||||| | |||||||| |||||||||| |||||||||||||||| |||||||||||||  ||||    
T  23972949 atgcatatagagtcgagttagagacattgcatacataactgtaggtctattt-gaagatgtgtgattaaaagatgtgatattttaagatgtgtacctatt 23972851  T
Q  209 taaagatgtgatat 222  Q
    ||||||||||||||    
T  23972850 taaagatgtgatat 23972837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 14644826 - 14644616
Alignment:
Q  10 tttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccaca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || ||||    
T  14644826 tttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataactatgatatccaaaaccgatatcaca 14644727  T
Q  110 tgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattattt 209  Q
    |||||||||||||||||||| |||||| ||| ||||| |  | |||||||| ||| | ||||||||||||||||||||| |||| ||| ||||| |||||    
T  14644726 tgcatatagagtcgagttagagacattacatacataattataggtctattt-gaaaaggtgtaattaaaagatgtgatattttacgatatgtaactattt 14644628  T
Q  210 aaagatgtgata 221  Q
    ||||||||||||    
T  14644627 aaagatgtgata 14644616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 4529989 - 4529782
Alignment:
Q  13 ggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacatgc 112  Q
    ||||| ||||||||||||||||||| |||||||| ||||| || ||||||||| ||||||||||||||||  ||||||||||||||  | ||||||||||    
T  4529989 ggtgtccatgcattcatggtcagtctgatttaaatatgtgatttaagatgggg-ataaatcagtaacatacctctgatatccaaaaatgttaccacatgc 4529891  T
Q  113 atatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattatttaaa 212  Q
    |||||||| |||||||| |||||||||| ||||||| ||||||||||| |||||||||||||||||  || || || || || || ||||| ||||||||    
T  4529890 atatagagccgagttagagacattgcatacataactacaagtctattt-gaagatgtgtaattaaataatttgttatttaaaaatatgtaactatttaaa 4529792  T
Q  213 gatgtgatat 222  Q
    ||||||||||    
T  4529791 gatgtgatat 4529782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 19612930 - 19613056
Alignment:
Q  15 tgttcatgcattcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacatgca 113  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||| |||||||||| ||||| ||||||||||||    
T  19612930 tgttcatgcattcatggtcagtccgatttaaagatgtgatttaaagatggaggattaatcagtaacataactctgatatccgaaaccagtaccacatgca 19613029  T
Q  114 tatagagtcgagttagggacattgcat 140  Q
    |||||||||||||||||||||||||||    
T  19613030 tatagagtcgagttagggacattgcat 19613056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 18875161 - 18875044
Alignment:
Q  101 ggtaccacatgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtg 200  Q
    |||||||||||  |||||| |||||||||||||||||||| ||||| ||||||||||| | ||| |||||||||||||||||||  |  || ||||||||    
T  18875161 ggtaccacatg--tataga-tcgagttagggacattgcatacataattgcaagtctatat-gaatatgtgtaattaaaagatgttctttttaaagatgtg 18875066  T
Q  201 taattatttaaagatgtgatat 222  Q
    ||| |||||||||||| |||||    
T  18875065 taactatttaaagatgagatat 18875044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 20770710 - 20770653
Alignment:
Q  95 aaaaccggtaccacatgcatatagagtcgagttagggacattgcatccataactgcaa 152  Q
    ||||| |||||||||||||||||||||||||||||| |||| |||| |||||||||||    
T  20770710 aaaactggtaccacatgcatatagagtcgagttaggtacatcgcatacataactgcaa 20770653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 12385288 - 12385382
Alignment:
Q  24 attcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacatgcatata 117  Q
    ||||||||||||||  |||| |||||||| ||| |||||||||||||| || ||||||| | || || ||||||||    |||||||||||||||    
T  12385288 attcatggtcagtcacatttgaagatgtgatttgaagatgggggataactcggtaacattactcagacatccaaaattaataccacatgcatata 12385382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 9565036 - 9565073
Alignment:
Q  14 gtgttcatgcattcatggtcagtccgatttaaagatgt 51  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  9565036 gtgttcatgcattcatggtcagtcctatttaacgatgt 9565073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 15691376 - 15691335
Alignment:
Q  101 ggtaccacatgcatatagagtcgagt-tagggacattgcatc 141  Q
    ||||||||||||||||| |||||||| |||||||||||||||    
T  15691376 ggtaccacatgcatatatagtcgagtgtagggacattgcatc 15691335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 9609862 - 9609818
Alignment:
Q  101 ggtaccacatgcatatagagtcgagttagggacattgcatccata 145  Q
    |||||||||||||||||||||| ||||||| ||||| ||| ||||    
T  9609862 ggtaccacatgcatatagagtcaagttaggtacattccatacata 9609818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 3472912 - 3473122
Alignment:
Q  11 ttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  3472912 ttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataactctgatatccaaaaccggtacaacat 3473011  T
Q  111 gcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattattta 210  Q
    ||||||||||||||||||| |||||||||| |||||||| | |||||||| |||||| |||||||||||||||||||| |||||||||||||  ||||||    
T  3473012 gcatatagagtcgagttagagacattgcatacataactgtaggtctattt-gaagatatgtaattaaaagatgtgatattttaagatgtgtacctattta 3473110  T
Q  211 aagatgtgatat 222  Q
    ||||||||||||    
T  3473111 aagatgtgatat 3473122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 18539220 - 18539432
Alignment:
Q  11 ttggtgttcatgcattcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccaca 109  Q
    |||||||||||||||||||| ||||||||||||||| ||||| |||||||||||| ||||||||||||| |||| ||| | |||||||||||||||||||    
T  18539220 ttggtgttcatgcattcatgttcagtccgatttaaatatgtgatttaaagatgggagataaatcagtaagataactctaaaatccaaaaccggtaccaca 18539319  T
Q  110 tgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaatta-tt 208  Q
    |||||||||||||||||||| |||||||||| |||||||| | || ||||| ||||||||||||||||||||||| ||| |||||||| ||||| || ||    
T  18539320 tgcatatagagtcgagttagagacattgcatacataactgtaggtatattt-gaagatgtgtaattaaaagatgtaatactttaagatctgtaactattt 18539418  T
Q  209 taaagatgtgatat 222  Q
    |||||||| |||||    
T  18539419 taaagatgcgatat 18539432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 3586170 - 3586037
Alignment:
Q  11 ttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||||||||||| |||||| ||||    
T  3586170 ttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgcgagattaatcagtaacataactctgatatccaaaatcggtactacat 3586071  T
Q  111 gcatatagagtcgagttagggacattgcatccat 144  Q
    ||||||||||||||||||||||||||||||||||    
T  3586070 gcatatagagtcgagttagggacattgcatccat 3586037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 98 - 222
Target Start/End: Original strand, 39728849 - 39728972
Alignment:
Q  98 accggtaccacatgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagat 197  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||| || | |||||||| |||||||||||||||||||| |||||| ||||||||    
T  39728849 accggtaccacatgcatatagagtcgagttagagacattgcatacataattgtaggtctattt-gaagatgtgtaattaaaagaagtgatattttaagat 39728947  T
Q  198 gtgtaattatttaaagatgtgatat 222  Q
    |||||  ||||||||||||||||||    
T  39728948 gtgtacgtatttaaagatgtgatat 39728972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 39728206 - 39728300
Alignment:
Q  11 ttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtacc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||| ||||||||||||||||||||||    
T  39728206 ttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaaccagt-tcataactctgatatccaaaaccggtacc 39728300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 15778350 - 15778435
Alignment:
Q  53 tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacatgcatatagagtcgagttagggacattgc 138  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  15778350 tttaaagatgggggataaatcagtaacataactctgatatccaaaatcagtaccacatgcatatagagtcgagttagggacattgc 15778435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 18694761 - 18694881
Alignment:
Q  101 ggtaccacatgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtg 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||||||||||  | || ||||  ||    
T  18694761 ggtaccacatgcatatagagtcgagttagggacattgcatacataactgcaagtctactt-aaagatgtgtaattaaaagatgtgtgatttaaagacatg 18694859  T
Q  201 taattatttaaagatgtgatat 222  Q
    ||| ||| ||||||||||||||    
T  18694860 taaatatgtaaagatgtgatat 18694881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 18710280 - 18710400
Alignment:
Q  101 ggtaccacatgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtg 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||||||||||  | || ||||  ||    
T  18710280 ggtaccacatgcatatagagtcgagttagggacattgcatacataactgcaagtctactt-aaagatgtgtaattaaaagatgtgtgatttaaagacatg 18710378  T
Q  201 taattatttaaagatgtgatat 222  Q
    ||| ||| ||||||||||||||    
T  18710379 taaatatgtaaagatgtgatat 18710400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 19595813 - 19595718
Alignment:
Q  127 tagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattatttaaagatgtgatat 222  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || || |||| ||| |||||||||||| |||||    
T  19595813 tagggacattgcatacataactgcaagtctattttgaagatgtgtaattaaaagatgtgatatttaaaaatgtataactatttaaagatgggatat 19595718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 3289575 - 3289496
Alignment:
Q  101 ggtaccacatgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaaga 181  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| |||||||||| ||| |||||    
T  3289575 ggtaccacatgcatatagagtcgagttagagacattgcatacataactacaagtctattt-gaagatgtgtgatttaaaga 3289496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 3475840 - 3475798
Alignment:
Q  15 tgttcatgcattcatggtcagtccgatttaaagatgtgtttaa 57  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  3475840 tgttcatgcattcttggtcagtccgatttaaagatgtgtttaa 3475798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 782 - 571
Alignment:
Q  11 ttggtgttcatgcattcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccaca 109  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  782 ttggtgttcatgcattcatggtcagtccgatttaaagatgtgatttaaagatgggggataaatcagtaacatatctctgatatccaaaaccggtaccaca 683  T
Q  110 tgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattattt 209  Q
    |||||||||||||||||||| |||||||||| |||||||||| |||||||| |||||||  |||||||||||||||||| |||||||||||||| |||||    
T  682 tgcatatagagtcgagttagagacattgcatacataactgcaggtctattt-gaagatgcataattaaaagatgtgatattttaagatgtgtaaatattt 584  T
Q  210 aaagatgtgatat 222  Q
    |||||||||||||    
T  583 aaagatgtgatat 571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 11509746 - 11509956
Alignment:
Q  11 ttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  11509746 ttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcaataacataactctgatatccaaaaccggtaccacat 11509845  T
Q  111 gcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattattta 210  Q
    ||||||||||||||||||| |||||||||| |||||||| | | |||||| |||||||||||||||||||||||||||  ||||||||||||  ||||||    
T  11509846 gcatatagagtcgagttagagacattgcatacataactgtatgactattt-gaagatgtgtaattaaaagatgtgatatattaagatgtgtacctattta 11509944  T
Q  211 aagatgtgatat 222  Q
    ||||||||||||    
T  11509945 aagatgtgatat 11509956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 18148734 - 18148944
Alignment:
Q  11 ttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacat 110  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||    
T  18148734 ttggtgttcatgcattcatggtcagtctgatttaaagatgtgtttaaagatgggggataaatcagtaacataactcagatattcaaaaccggtaccacat 18148833  T
Q  111 gcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattattta 210  Q
    ||||||||||||||||||| |||||||||| ||||| || | |||||||| ||||||||||||||||||||||||||| |||||||||||||  ||||||    
T  18148834 gcatatagagtcgagttagagacattgcatacataattgtaggtctattt-gaagatgtgtaattaaaagatgtgatattttaagatgtgtacatattta 18148932  T
Q  211 aagatgtgatat 222  Q
    ||||||||||||    
T  18148933 aagatgtgatat 18148944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 22530124 - 22530331
Alignment:
Q  15 tgttcatgcattcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacatgca 113  Q
    |||||| ||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22530124 tgttcaagcattcatggtcagtccgatttaaatatgtgatttaaagatgtgggataaatcagtaacataactctgatatccaaaaccggtaccacatgca 22530223  T
Q  114 tatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattatttaaag 213  Q
    |||||||||||||||| |||||||||| ||||| || | |||||| | ||||||||||| |||||||| |||||| ||||||||||| || |||||||||    
T  22530224 tatagagtcgagttagagacattgcatacataattgtaggtctatct-gaagatgtgtagttaaaagacgtgatattttaagatgtgcaactatttaaag 22530322  T
Q  214 atgtgatat 222  Q
    |||| ||||    
T  22530323 atgtaatat 22530331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 34705977 - 34705773
Alignment:
Q  12 tggtgttcatgcattcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacat 110  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||    
T  34705977 tggtgttcatgcattcatggtcagtccgatttaaagatgtgatttaaagatggaggattaatcagtaacataactctgatatccaaaaccggtaccacat 34705878  T
Q  111 gcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattattta 210  Q
    ||| ||||||| ||||||| |||||||||| |||||||| | |||||||| ||||||||||      ||||||||||| |||||| ||||||| | ||||    
T  34705877 gcagatagagttgagttagagacattgcatacataactgtaggtctattt-gaagatgtgt------aagatgtgatattttaagttgtgtaagtgttta 34705785  T
Q  211 aagatgtgatat 222  Q
    ||||||||||||    
T  34705784 aagatgtgatat 34705773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 53 - 222
Target Start/End: Original strand, 21860584 - 21860751
Alignment:
Q  53 tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacatgcatatagagtcgagttagggacattgcatccataactgcaa 152  Q
    |||||||||||||||||| |||||||||||  ||||||||||||||   ||| ||||| |||||| |||||||||||||||||||||| ||||| |||||    
T  21860584 tttaaagatgggggataa-tcagtaacatacatctgatatccaaaattagtaacacattcatatatagtcgagttagggacattgcatacataattgcaa 21860682  T
Q  153 gtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattatttaaagatgtgatat 222  Q
    |||||||| |||||||||||||| |||||| |  || || || |||||||| |||||||||| |||||||    
T  21860683 gtctattt-gaagatgtgtaatttaaagatatactatttaaatatgtgtaactatttaaagacgtgatat 21860751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 13694274 - 13694170
Alignment:
Q  108 catgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattat 207  Q
    |||||||||||| |||||||||||||||||||| ||||  ||||||||||||| |||||||||| ||||||||| |||  | || |||||||||| ||||    
T  13694274 catgcatatagaatcgagttagggacattgcatacatatttgcaagtctattt-gaagatgtgtgattaaaagacgtgtcatttaaagatgtgtatttat 13694176  T
Q  208 ttaaag 213  Q
    ||||||    
T  13694175 ttaaag 13694170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 159
Target Start/End: Complemental strand, 3377820 - 3377724
Alignment:
Q  64 gggataaatcagtaacataattctgatatccaaaa-ccggtaccacatgcatatagagtcgagttagggacattgcatccataactgcaagtctatt 159  Q
    ||||| ||||| ||| |||| | |||||||||||| |||||||| | ||| ||||||||||||||||| ||||||||| |||| |||||||| ||||    
T  3377820 gggattaatcaataatataactatgatatccaaaaaccggtaccgcgtgcgtatagagtcgagttaggtacattgcatacatatctgcaagtgtatt 3377724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 21501014 - 21501091
Alignment:
Q  53 tttaaagatgggggataaatcagtaacataattctgatatccaaaacc-ggtaccacatgcatatagagtcgagttag 129  Q
    ||||||||||  |||| |||| ||||||||| || || ||| |||||  |||||||||||||||||||||||| ||||    
T  21501014 tttaaagatgaaggatcaatcggtaacataactccgacatctaaaacttggtaccacatgcatatagagtcgaattag 21501091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 6019275 - 6019331
Alignment:
Q  70 aatcagtaacataattctgatatccaaaaccggtaccacatgcatatagagtcgagt 126  Q
    |||| ||||||||| || || ||||||||  ||||||||||||||||||| ||||||    
T  6019275 aatcggtaacataactccgacatccaaaaatggtaccacatgcatatagaatcgagt 6019331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 13386750 - 13386703
Alignment:
Q  75 gtaacataattctgatatccaaaaccggtaccacatgcatatagagtcg 123  Q
    ||||||||| |||||||||||||| |||||||||| ||||||| |||||    
T  13386750 gtaacataactctgatatccaaaa-cggtaccacaagcatataaagtcg 13386703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 19193977 - 19194024
Alignment:
Q  75 gtaacataattctgatatccaaaaccggtaccacatgcatatagagtcg 123  Q
    ||||||||| ||||||||||||||  |||||||||||| ||||||||||    
T  19193977 gtaacataactctgatatccaaaa-tggtaccacatgcgtatagagtcg 19194024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 21498603 - 21498551
Alignment:
Q  70 aatcagtaacataattctgatatccaaaacc-ggtaccacatgcatatagagt 121  Q
    |||||||||||||| ||||| ||| |||||| |||||||| ||||||||||||    
T  21498603 aatcagtaacataactctgacatctaaaacctggtaccacgtgcatatagagt 21498551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 39437067 - 39437271
Alignment:
Q  10 tttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccaca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| |||||||||||||||||||||    
T  39437067 tttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgtgggataaatcagtaatataactctaatatccaaaaccggtaccaca 39437166  T
Q  110 tgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattattt 209  Q
    |||||||| ||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||| ||||| |||||||| |||||    
T  39437167 tgcatataaagtcgagttagagacattgcatacataactgcatgtctattt-gaagatgtgtaattaaaagatgtgatattttaaaatgtgtaactattt 39437265  T
Q  210 aaagat 215  Q
    ||||||    
T  39437266 aaagat 39437271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 29497057 - 29497130
Alignment:
Q  64 gggataaatcagtaacataattctgatatccaaaaccggtaccacatgcatatagagtcgagttagggacattg 137  Q
    |||||||||||||||||||  |||||||| |||||| ||||||||||||||||| ||||||||||| |||||||    
T  29497057 gggataaatcagtaacatacctctgatatacaaaactggtaccacatgcatatatagtcgagttagcgacattg 29497130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 27273200 - 27273153
Alignment:
Q  75 gtaacataattctgatatccaaaaccggtaccacatgcatatagagtcg 123  Q
    ||||||||| || |||||||||||| |||||||||||||||||||||||    
T  27273200 gtaacataactccgatatccaaaac-ggtaccacatgcatatagagtcg 27273153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 19049455 - 19049409
Alignment:
Q  76 taacataattctgatatccaaaaccggtaccacatgcatatagagtcg 123  Q
    |||||||| || |||||||||||| |||||||||||||||||||||||    
T  19049455 taacataactccgatatccaaaac-ggtaccacatgcatatagagtcg 19049409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 140
Target Start/End: Complemental strand, 32039849 - 32039818
Alignment:
Q  109 atgcatatagagtcgagttagggacattgcat 140  Q
    ||||||||||||||||||||||||||||||||    
T  32039849 atgcatatagagtcgagttagggacattgcat 32039818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 29497017 - 29497055
Alignment:
Q  11 ttggtgttcatgcattcatggtcagtccgatttaaagat 49  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  29497017 ttggtgttcatgcattcatggtcagtctaatttaaagat 29497055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 889872 - 889904
Alignment:
Q  11 ttggtgttcatgcattcatggtcagtccgattt 43  Q
    |||||||||||||||||||||||||||| ||||    
T  889872 ttggtgttcatgcattcatggtcagtcctattt 889904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 9882450 - 9882239
Alignment:
Q  11 ttggtgttcatgcattcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccaca 109  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  9882450 ttggtgttcatgcattcatggtcagtccgatttaaagatgtgatttaaagatgggggattaatcagtaacataactctgatatccaaaaccggtaccaca 9882351  T
Q  110 tgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattattt 209  Q
    |||||||||||||||||||| |||||||||| |||||||| | |||||||| ||||||||||||||||| ||||||||| |||||||||| ||| | |||    
T  9882350 tgcatatagagtcgagttagagacattgcatacataactgtaggtctattt-gaagatgtgtaattaaatgatgtgatattttaagatgtttaagtgttt 9882252  T
Q  210 aaagatgtgatat 222  Q
    |||||||||||||    
T  9882251 aaagatgtgatat 9882239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 40387712 - 40387505
Alignment:
Q  14 gtgttcatgcattcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacatgc 112  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| ||||||||||| ||||||||||||    
T  40387712 gtgttcatgcattcatggtaagtccgatttaaagatgtgatttaaagatgggg-ataaatcagtaacataactctaatatccaaaactggtaccacatgc 40387614  T
Q  113 atatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattatttaaa 212  Q
    |||||||||||||||||  ||||||||| |||||||| | |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  40387613 atatagagtcgagttagaaacattgcatacataactgtaggtctattt-gaagatgtgtaattaaaagatctgataatttaagatgtgtaactatttaaa 40387515  T
Q  213 gatgtgatat 222  Q
    ||||||||||    
T  40387514 gatgtgatat 40387505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 1216869 - 1216744
Alignment:
Q  10 tttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccaca 109  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  1216869 tttggtgttcatgcattcatggttagtccgatttaaacatgtgtttaaagatgggggataaatcaataagataattctgatatccaaaaccggtaccaca 1216770  T
Q  110 tgcatatagagtcgagttagggacat 135  Q
    ||||||||||||||||||||||||||    
T  1216769 tgcatatagagtcgagttagggacat 1216744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 42145554 - 42145381
Alignment:
Q  11 ttggtgttcatgcattcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccaca 109  Q
    ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| |||||||||||||||||  | |||||||||||| | ||||||||    
T  42145554 ttggtgttcatgcattcttggtcagtccgatttaatgatgtgatttaaagatgggagataaatcagtaacatacctttgatatccaaaatcagtaccaca 42145455  T
Q  110 tgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgt 184  Q
    |||||||||||||||||||||||||||||||  |||||| ||| ||||||| ||| |||||| ||||||||||||    
T  42145454 tgcatatagagtcgagttagggacattgcatatataactacaaatctattt-gaatatgtgtgattaaaagatgt 42145381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 17289671 - 17289632
Alignment:
Q  101 ggtaccacatgcatatagagtcgagttagggacattgcat 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17289671 ggtaccacatgcatatagagtcgagttagggacattgcat 17289632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 17289790 - 17289761
Alignment:
Q  8 agtttggtgttcatgcattcatggtcagtc 37  Q
    ||||||||||||||||||||||||||||||    
T  17289790 agtttggtgttcatgcattcatggtcagtc 17289761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 42145378 - 42145310
Alignment:
Q  152 agtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattatttaaagatgtgata 221  Q
    ||||||||| |||||||||| |||||||| |||| || |  ||||||||||| |||||||||| ||||||    
T  42145378 agtctattt-gaagatgtgtgattaaaagttgtgttattcaaagatgtgtaaatatttaaagacgtgata 42145310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 52272852 - 52272645
Alignment:
Q  14 gtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacatgca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| |||||||||||    
T  52272852 gtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgtgggataaatcagtaacataactatgatatccaaaaccgataccacatgca 52272753  T
Q  114 tatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattatttaaag 213  Q
    |||||||||||||||| |||||||||| || |||||||  ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  52272752 tatagagtcgagttagagacattgcatacacaactgcagttctattt-gaagatgtgtaattaaaagatgtgatattttaagatgtgtaaatatttaaag 52272654  T
Q  214 atgtgatat 222  Q
    ||| |||||    
T  52272653 atgcgatat 52272645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 12785199 - 12785022
Alignment:
Q  14 gtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataa-------ttctgatatccaaaaccggtacc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  12785199 gtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataactctgatatctgatatccaaaaccggtacc 12785100  T
Q  107 acatgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtg 185  Q
    ||||||||||||||||||||||| |||||||||| ||||| || | |||||||| ||||||||||||||||||||||||    
T  12785099 acatgcatatagagtcgagttagagacattgcatacataattgtaggtctattt-gaagatgtgtaattaaaagatgtg 12785022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 41138001 - 41138127
Alignment:
Q  14 gtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacatgca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  41138001 gtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataactctgatatccaaaactggtaccacatgca 41138100  T
Q  114 tatagagtcgagttagggacattgcat 140  Q
    ||||||||| ||||| |||||||||||    
T  41138101 tatagagtcaagttaaggacattgcat 41138127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 9132516 - 9132647
Alignment:
Q  10 tttggtgttcatgcattcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccac 108  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  9132516 tttggtgttcatgcattcatagttagtccgatttaaagatgtgatttaaagatgggggataaatcagtaacatacctctgatatccaaaaccggtaccac 9132615  T
Q  109 atgcatatagagtcgagttagggacattgcat 140  Q
    ||||||||||||||||||||||||||||||||    
T  9132616 atgcatatagagtcgagttagggacattgcat 9132647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 23633267 - 23633398
Alignment:
Q  10 tttggtgttcatgcattcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccac 108  Q
    |||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23633267 tttgatgttcatgaattcatggtcagtccgatttaaagatgtgatttaaagatgggggataaatcagtaacataactctgatatccaaaaccggtaccac 23633366  T
Q  109 atgcatatagagtcgagttagggacattgcat 140  Q
    ||||||||||||||||||||| ||||||||||    
T  23633367 atgcatatagagtcgagttagtgacattgcat 23633398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 89988 - 89878
Alignment:
Q  101 ggtaccacatgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtg 200  Q
    ||||| |||||||||||||||||||||||||||||||||| ||| ||||||||| || || |||||||||||||||||| |||||  | || ||||  ||    
T  89988 ggtactacatgcatatagagtcgagttagggacattgcatacattactgcaagtttactt-gaagatgtgtaattaaaacatgtgtgatttaaagacatg 89890  T
Q  201 taattatttaaa 212  Q
    ||||||||||||    
T  89889 taattatttaaa 89878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 18249887 - 18249972
Alignment:
Q  101 ggtaccacatgcatatagagtcgagttagggacattgcatccata--actgcaagtctatttcgaagatgtgtaattaaaagatgtg 185  Q
    |||||||||||||||||||||||||||| ||||||| ||| ||||  ||| |||||||||||  ||||||| ||||| |||||||||    
T  18249887 ggtaccacatgcatatagagtcgagttaaggacattacatacataacactacaagtctattt-taagatgtttaatttaaagatgtg 18249972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 19474425 - 19474476
Alignment:
Q  85 tctgatatccaaaaccggtaccacatgcatatagagtcgagttagggacatt 136  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||||||||||    
T  19474425 tctgatattcaaaaacggtaccacatgcatatagagtcaagttagggacatt 19474476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 18514938 - 18515026
Alignment:
Q  135 ttgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtg-ataat-ttaagatgtgtaattatttaaagatgtgatat 222  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||| || |  || | ||||  ||||||||||||||||||||||||    
T  18514938 ttgcatacataactgcaagtctactt-gaagatgtgtaattaaaagatatgtacgatgtaaagacatgtaattatttaaagatgtgatat 18515026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 19770139 - 19770312
Alignment:
Q  11 ttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19770139 ttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataactctgatatccaaaaccggtaccacat 19770238  T
Q  111 gcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtg 185  Q
    ||||||||||||||||||| |||||||||| |||||||| | |||||||| ||||||||||||||||||||||||    
T  19770239 gcatatagagtcgagttagagacattgcatacataactgtaggtctattt-gaagatgtgtaattaaaagatgtg 19770312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 19891910 - 19891702
Alignment:
Q  11 ttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacat 110  Q
    ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||    
T  19891910 ttggtgttcatgcattcgtagtcagtccaatttagagatgtatttaaagatggggtataaatcagtaacataactc--atatccaaaaccggtaccacat 19891813  T
Q  111 gcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattattta 210  Q
    ||||||||||||||||||| |||||||||| ||||| || | |||||||| |||||||||||||| |||||||||||| |||||||||||||  ||||||    
T  19891812 gcatatagagtcgagttagagacattgcatacataagtgtaggtctattt-gaagatgtgtaatttaaagatgtgatattttaagatgtgtacctattta 19891714  T
Q  211 aagatgtgatat 222  Q
    ||||||||||||    
T  19891713 aagatgtgatat 19891702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 9547840 - 9547629
Alignment:
Q  10 tttggtgttcatgcattcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccac 108  Q
    |||| ||| ||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  9547840 tttgatgtacatgcatgcatggtcagttcgatttaaagatgtgatttaaagatgggg-ataaatcagtaacataactttgatatccaaaaccggtaccac 9547742  T
Q  109 atgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattatt 208  Q
    |||||| |||||||||||||| |||||||||| |||||||| | |||||||| ||||||||||||||| ||||||||||  || ||||||||| | ||||    
T  9547741 atgcatgtagagtcgagttagagacattgcatacataactgtaggtctattt-gaagatgtgtaattataagatgtgatgtttcaagatgtgtgactatt 9547643  T
Q  209 taaagatgtgatat 222  Q
    ||||||||||||||    
T  9547642 taaagatgtgatat 9547629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 22468952 - 22468810
Alignment:
Q  11 ttggtgttcatgcattcatggtcagtccgatttaaagatgtg--------tttaaagatgggggataaatcagtaacataattctgatatccaaaaccgg 102  Q
    |||||||||||||||||||||||| ||||||||||||||||         ||||||||||||| |||||||||||||| |  ||||||||||||||   |    
T  22468952 ttggtgttcatgcattcatggtcaatccgatttaaagatgtaatttaagatttaaagatgggg-ataaatcagtaacacacctctgatatccaaaatatg 22468854  T
Q  103 taccacatgcatatagagtcgagttagggacattgcatccataa 146  Q
    ||| |||||||||||||||||||||||| ||||||||| |||||    
T  22468853 tactacatgcatatagagtcgagttaggaacattgcatacataa 22468810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 12876106 - 12876176
Alignment:
Q  53 tttaaagatgggggataaatcagtaacataattctgatatccaaaac-cggtaccacatgcatatagagtc 122  Q
    |||||||||||||||| | || ||||||||| ||||| |||||||||  |||||||||| |||||||||||    
T  12876106 tttaaagatgggggattactcggtaacataactctgacatccaaaacatggtaccacatacatatagagtc 12876176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 19565277 - 19565316
Alignment:
Q  101 ggtaccacatgcatatagagtcgagttagggacattgcat 140  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  19565277 ggtaccacatgcatatagattcgagttagagacattgcat 19565316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 20738946 - 20738985
Alignment:
Q  101 ggtaccacatgcatatagagtcgagttagggacattgcat 140  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  20738946 ggtaccacatgcatatagagccgagttaggcacattgcat 20738985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 17729544 - 17729507
Alignment:
Q  87 tgatatccaaaaccggtaccacatgcatatagagtcga 124  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  17729544 tgatatccaaaaacggtaccacatgcatatatagtcga 17729507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 19565160 - 19565200
Alignment:
Q  11 ttggtgttcatgcattcatggtcagtccgatttaaagatgt 51  Q
    |||||||||||||||||||| ||||||| |||||| |||||    
T  19565160 ttggtgttcatgcattcatgctcagtcctatttaacgatgt 19565200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 172466 - 172676
Alignment:
Q  10 tttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccaca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || ||||    
T  172466 tttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataactatgatatccaaaaccgatatcaca 172565  T
Q  110 tgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattattt 209  Q
    |||||||||||||||||||| |||||| ||| ||||| |  | |||||||| ||| | ||||||||||||||||||||| |||| ||| ||||| |||||    
T  172566 tgcatatagagtcgagttagagacattacatacataattataggtctattt-gaaaaggtgtaattaaaagatgtgatattttacgatatgtaactattt 172664  T
Q  210 aaagatgtgata 221  Q
    ||||||||||||    
T  172665 aaagatgtgata 172676  T

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Target: scaffold0024 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 106885 - 106680
Alignment:
Q  16 gttcatgcattcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacatgcat 114  Q
    |||||||||||||| ||||| | |||||||||||||| |||||||| |||  ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  106885 gttcatgcattcatagtcagactgatttaaagatgtgatttaaagacggga-ataaatcagtaacataactctgatatccaaaaccggtaccacatgcat 106787  T
Q  115 atagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattatttaaaga 214  Q
    ||||||||||||||| |||||||||| |||||||| | |||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| ||||    
T  106786 atagagtcgagttagagacattgcatacataactgtaggtctattt-gaagatgtgtaattaaaagatgtgatattttaagaagtgtaattattttaaga 106688  T
Q  215 tgtgatat 222  Q
    ||||||||    
T  106687 tgtgatat 106680  T

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Target: scaffold0323 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 15437 - 15300
Alignment:
Q  10 tttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccaca 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  15437 tttgatgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataactctgatatccaaaaccggtactaca 15338  T
Q  110 tgcatatagagtcgagttagggacattgcatccataac 147  Q
    |||||||||||||||||||| |||||||| | ||||||    
T  15337 tgcatatagagtcgagttagagacattgcttacataac 15300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 16092543 - 16092412
Alignment:
Q  10 tttggtgttcatgcattcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccac 108  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  16092543 tttggtgttcatgcattcatgatcagtccgatttaaagatgtgatttaaagatgggggataaatcagtaacataactctgatattcaaaaccggtaccac 16092444  T
Q  109 atgcatatagagtcgagttagggacattgcat 140  Q
    || |||||| ||||||||||||||||||||||    
T  16092443 atacatatatagtcgagttagggacattgcat 16092412  T

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Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 20264687 - 20264813
Alignment:
Q  14 gtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacatgca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||  ||||||||||||    
T  20264687 gtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagctgggggataaatcagtaacataactctgatgttcaaaacaagtaccacatgca 20264786  T
Q  114 tatagagtcgagttagggacattgcat 140  Q
    |||||||||||||||||||||||||||    
T  20264787 tatagagtcgagttagggacattgcat 20264813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 32625541 - 32625661
Alignment:
Q  101 ggtaccacatgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataattt-aagatgt 199  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||| |||||| |||| ||    
T  32625541 ggtaccacatgcatatagagtcgagttagggacattgcatacataactgcaagtctactt-gaagatgtgtaattaaaagatgtg-taatttaaagacgt 32625638  T
Q  200 gtaattatttaaagatgtgatat 222  Q
    |||||||||||||||||||||||    
T  32625639 gtaattatttaaagatgtgatat 32625661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 34892295 - 34892184
Alignment:
Q  110 tgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtgtaattattt 209  Q
    |||||||||||||||||||| |||||||||| |||||||| | |||||||| ||||||||||||||||||||||||||| |||||||||||||  |||||    
T  34892295 tgcatatagagtcgagttagagacattgcatacataactgtaggtctattt-gaagatgtgtaattaaaagatgtgatattttaagatgtgtacctattt 34892197  T
Q  210 aaagatgtgatat 222  Q
    |||||||||||||    
T  34892196 aaagatgtgatat 34892184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 38991788 - 38991701
Alignment:
Q  53 tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacatgcatatagagtcgagttagggacattgcat 140  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38991788 tttaaagatggaggataaatcagtaacatacctctgatatccaaaaccggtaccacatgcatatagagtcgagttagggacattgcat 38991701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 27401699 - 27401814
Alignment:
Q  14 gtgttcatgcattcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacatgc 112  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||| | ||||  |||||||||||||| ||||| |||| ||    
T  27401699 gtgttcatgtattcatgatcagtccgatttaaagatgtgatttaaagatggggaatacatcaggagcatacctctgatatccaaaatcggtatcacaagc 27401798  T
Q  113 atatagagtcgagtta 128  Q
    ||||||||||||||||    
T  27401799 atatagagtcgagtta 27401814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 20178711 - 20178635
Alignment:
Q  108 catgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtg 185  Q
    ||||||||||||||||||||||||||||||||| ||||| |||| ||| |||| |||||||||| |||||||||||||    
T  20178711 catgcatatagagtcgagttagggacattgcatacataattgcatgtcaattt-gaagatgtgtgattaaaagatgtg 20178635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 22385899 - 22385814
Alignment:
Q  53 tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtaccacatgcatatagagtcgagttagggacattgcat 140  Q
    ||||||||||| ||||||||||||||||||  ||||||||||| |||||||| ||||||  |||||||||||||| |  |||||||||    
T  22385899 tttaaagatggaggataaatcagtaacatacctctgatatccataaccggtatcacatg--tatagagtcgagtttgaaacattgcat 22385814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 30613270 - 30613327
Alignment:
Q  72 tcagtaacataattctgatatccaaaaccggtaccacatgcatatagagtcgagttag 129  Q
    |||| ||||||  ||||||||||||||  ||||||||||||||||| |||||||||||    
T  30613270 tcagaaacatacctctgatatccaaaaaaggtaccacatgcatataaagtcgagttag 30613327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 29890563 - 29890519
Alignment:
Q  87 tgatatccaaaacc-ggtaccacatgcatatagagtcgagttagg 130  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||    
T  29890563 tgatatctaaaacctggtaccacatgcatatagagtcgagttagg 29890519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 19467084 - 19467160
Alignment:
Q  70 aatcagtaacataattctgatatccaaaacc-ggtaccacatgcatatagagtcgagttagggacattgcatccata 145  Q
    |||||||| ||||  ||||||||||||||   |||||||||||||| || ||| |||||||| ||||||||| ||||    
T  19467084 aatcagtaccatacctctgatatccaaaaattggtaccacatgcatgtacagttgagttaggtacattgcatacata 19467160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 12139 - 12023
Alignment:
Q  101 ggtaccacatgcatatagagtcgagttagggacattgcatccataactgcaagtctatttcgaagatgtgtaattaaaagatgtgataatttaagatgtg 200  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||| | |||||||| ||||||||||||||||||||||||||| |||||||||||    
T  12139 ggtaccacatgcatatagagtcgagttagagacattgcatacataactgtaggtctattt-gaagatgtgtaattaaaagatgtgatattttaagatgtg 12041  T
Q  201 taattatttaaagatgtg 218  Q
    ||| ||||||| ||||||    
T  12040 taactatttaaggatgtg 12023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 9875 - 9784
Alignment:
Q  15 tgttcatgcattcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatccaaaaccggtac 105  Q
    ||||||||||||||||||| ||||||| ||||||| || ||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  9875 tgttcatgcattcatggtcggtccgatctaaagatatgatttaaagatgggggataaatcagtaacataactctgatattcaaaaccggtac 9784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 344 - 429
Alignment:
Q  11 ttggtgttcatgcattcatggtcagtccgatttaaagatgtg-tttaaagatgggggataaatcagtaacataattctgatatcca 95  Q
    ||||| || ||||||||||||||||||  ||||||||||||| ||||||||||| ||||||||||||||||||| | |||||||||    
T  344 ttggttttaatgcattcatggtcagtcatatttaaagatgtgatttaaagatggaggataaatcagtaacataactttgatatcca 429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 221894 - 221835
Alignment:
Q  101 ggtaccacatgcatatagagtcgagttagggacattgcatccataactgcaagtctattt 160  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||    
T  221894 ggtaccacatgcatatagagtcgagttagtgacattgcatacataactgcaagtatattt 221835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 66678 - 66752
Alignment:
Q  68 taaatcagtaacataattctgatatccaaaaccggtaccacatg--catatagagtcgagttagggacattgcat 140  Q
    |||||||  ||||||  ||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||    
T  66678 taaatcaacaacatacctctgatatccaaaaccggtacgacatgtgcatatagagtcgagttagggacattgcat 66752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 22899 - 22871
Alignment:
Q  101 ggtaccacatgcatatagagtcgagttag 129  Q
    |||||||||||||||||||||||||||||    
T  22899 ggtaccacatgcatatagagtcgagttag 22871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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