View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_436 (Length: 221)
Name: NF9913A_low_436
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_436 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 25988659 - 25988481
Alignment:
| Q |
22 |
gcactaaactcacactccctatttatagtggcgctaaccgcaaatagcgataagtaaggaagcacattggatgtccattatagaccttcttaacaaataa |
121 |
Q |
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| T |
25988659 |
gcactaaactcacactccctatttatagtggcgctaaccgcaaatagcgataagtaaggaagcacattggatgtccattatagaccttcttaacaaataa |
25988560 |
T |
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| Q |
122 |
tgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaactaagacaaacaaggat |
200 |
Q |
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| T |
25988559 |
tgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaactaagacaaacaaggat |
25988481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 25320973 - 25320891
Alignment:
| Q |
103 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
185 |
Q |
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| T |
25320973 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
25320891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 26150666 - 26150584
Alignment:
| Q |
103 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26150666 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
26150584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 25321008 - 25320975
Alignment:
| Q |
22 |
gcactaaactcacactccctatttatagtggcgc |
55 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
25321008 |
gcactaaactcacactccctatttatagtggcgc |
25320975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 26150701 - 26150668
Alignment:
| Q |
22 |
gcactaaactcacactccctatttatagtggcgc |
55 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
26150701 |
gcactaaactcacactccctatttatagtggcgc |
26150668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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