View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_443 (Length: 220)

Name: NF9913A_low_443
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_443
NF9913A_low_443
[»] chr2 (2 HSPs)
chr2 (19-191)||(41822980-41823152)
chr2 (187-220)||(44620481-44620514)
[»] chr8 (1 HSPs)
chr8 (187-220)||(22145961-22145994)
[»] chr7 (1 HSPs)
chr7 (187-220)||(48784744-48784777)
[»] chr6 (1 HSPs)
chr6 (187-220)||(16101890-16101923)
[»] chr4 (2 HSPs)
chr4 (187-220)||(16359012-16359045)
chr4 (187-220)||(47127326-47127359)
[»] chr3 (6 HSPs)
chr3 (187-220)||(2035562-2035595)
chr3 (187-220)||(2039303-2039336)
chr3 (187-220)||(2043044-2043077)
chr3 (187-220)||(14037724-14037757)
chr3 (187-220)||(14041192-14041225)
chr3 (187-220)||(39230355-39230388)
[»] chr1 (3 HSPs)
chr1 (187-220)||(14432888-14432921)
chr1 (187-220)||(20630824-20630857)
chr1 (187-220)||(36181149-36181182)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 41823152 - 41822980
Alignment:
Q  19 agattattgcagattttacatgcttttcacctgttaatttcagttgagtccttccattgatttcatagctagagtttggagtttcaaaaccttgagttac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41823152 agattattgcagattttacatgcttttcacctgttaatttcagttgagtccttccattgatttcatagctagagtttggagtttcaaaaccttgagttac 41823053  T
Q  119 tgttatttttcacatgcttttcacctttccttttcattctgatggtttatatcgtttgtgttctttgtttgag 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41823052 tgttatttttcacatgcttttcacctttccttttcattctgatggtttatatcgtttgtgttttttgtttgag 41822980  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 44620514 - 44620481
Alignment:
Q  187 ttgagagagctgttgtggttgatgttgttgagtg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  44620514 ttgagagagttgttgtggttgatgttgttgagtg 44620481  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 22145961 - 22145994
Alignment:
Q  187 ttgagagagctgttgtggttgatgttgttgagtg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  22145961 ttgagagagttgttgtggttgatgttgttgagtg 22145994  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 48784777 - 48784744
Alignment:
Q  187 ttgagagagctgttgtggttgatgttgttgagtg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  48784777 ttgagagagttgttgtggttgatgttgttgagtg 48784744  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 16101923 - 16101890
Alignment:
Q  187 ttgagagagctgttgtggttgatgttgttgagtg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  16101923 ttgagagagttgttgtggttgatgttgttgagtg 16101890  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 16359045 - 16359012
Alignment:
Q  187 ttgagagagctgttgtggttgatgttgttgagtg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  16359045 ttgagagagttgttgtggttgatgttgttgagtg 16359012  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 47127326 - 47127359
Alignment:
Q  187 ttgagagagctgttgtggttgatgttgttgagtg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  47127326 ttgagagagttgttgtggttgatgttgttgagtg 47127359  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 2035562 - 2035595
Alignment:
Q  187 ttgagagagctgttgtggttgatgttgttgagtg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  2035562 ttgagagagttgttgtggttgatgttgttgagtg 2035595  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 2039303 - 2039336
Alignment:
Q  187 ttgagagagctgttgtggttgatgttgttgagtg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  2039303 ttgagagagttgttgtggttgatgttgttgagtg 2039336  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 2043044 - 2043077
Alignment:
Q  187 ttgagagagctgttgtggttgatgttgttgagtg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  2043044 ttgagagagttgttgtggttgatgttgttgagtg 2043077  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 14037757 - 14037724
Alignment:
Q  187 ttgagagagctgttgtggttgatgttgttgagtg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  14037757 ttgagagagttgttgtggttgatgttgttgagtg 14037724  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 14041225 - 14041192
Alignment:
Q  187 ttgagagagctgttgtggttgatgttgttgagtg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  14041225 ttgagagagttgttgtggttgatgttgttgagtg 14041192  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 39230388 - 39230355
Alignment:
Q  187 ttgagagagctgttgtggttgatgttgttgagtg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  39230388 ttgagagagttgttgtggttgatgttgttgagtg 39230355  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 14432888 - 14432921
Alignment:
Q  187 ttgagagagctgttgtggttgatgttgttgagtg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  14432888 ttgagagagttgttgtggttgatgttgttgagtg 14432921  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 20630857 - 20630824
Alignment:
Q  187 ttgagagagctgttgtggttgatgttgttgagtg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  20630857 ttgagagagttgttgtggttgatgttgttgagtg 20630824  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 36181182 - 36181149
Alignment:
Q  187 ttgagagagctgttgtggttgatgttgttgagtg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  36181182 ttgagagagttgttgtggttgatgttgttgagtg 36181149  T

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