View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_448 (Length: 215)
Name: NF9913A_low_448
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_448 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 4e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 7839613 - 7839787
Alignment:
| Q |
21 |
cactaagagcacaaactctttccaaagcagacctccatttcttcaccttctccgtttcctttccaaatctcttttcatgttgaatcattgcaatttcata |
120 |
Q |
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| T |
7839613 |
cactaagagcacaaactcttttcaaagcagacctccatttcttcaccttctccgattcctttccaaatctcttttcatgttgaatcattgcaatttcata |
7839712 |
T |
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| Q |
121 |
gttctttctttgatgtctaacatcagaagcttccaccttataaactataacaaaaacagttttccctttcttctc |
195 |
Q |
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| T |
7839713 |
gctctttctctgatgtctaacatcagaagcttccaccttataaaatataacaaaaacagttttccctttcatctc |
7839787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 7762944 - 7763043
Alignment:
| Q |
21 |
cactaagagcacaaactctttccaaagcagacctccatttcttcaccttctccgtttcctttccaaatctcttttcatgttgaatcattgcaatttcata |
120 |
Q |
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| T |
7762944 |
cactgagagcacaaacacgattcaaagccaacctccatgctttcaccttctccgattcctttccaaatctattttcatgtttcatcattgcaatttcata |
7763043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 7755491 - 7755571
Alignment:
| Q |
21 |
cactaagagcacaaactctttccaaagcagacctccatttcttcaccttctccgtttcctttccaaatctcttttcatgtt |
101 |
Q |
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|||| ||||||||||||| | |||||| || ||||| ||||||||||||| |||| ||||||||||||||||||||| |
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| T |
7755491 |
cactgagagcacaaactcgattcaaagccaacttccatgctttcaccttctccgattcccttccaaatctcttttcatgtt |
7755571 |
T |
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