View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_452 (Length: 215)
Name: NF9913A_low_452
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_452 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 37181187 - 37181366
Alignment:
| Q |
20 |
catcacattggactattttggggttataactaatgtaggcaaccaaatgcttttgtcaaagtgaaacacaggaagttgaactaacttaaaattgcaaaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37181187 |
catcacattggactattttggggttataactaatgtaggcaaccaaatgcttttgtcaaagtgaaacacaggaagttgaactaacttaaaattgcaaaag |
37181286 |
T |
|
| Q |
120 |
ctcttatagttctccaaacaactctccttcaaatctctctcactctatataagaccatccactacccctttccttctcat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37181287 |
ctcttatagttctccaaacaactctccttcaaatctctctcactctatataagaccatccactacccctttccttctcat |
37181366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 37180512 - 37180380
Alignment:
| Q |
69 |
cttttgtcaaagtgaaacacaggaagttgaactaacttaaaattgcaaaagctctt-atagttc-tccaaacaactctccttcaaatctctctcactcta |
166 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| |||||||||||||||||| || |||| ||| ||| || ||||||||||||| ||||| |||| |
|
|
| T |
37180512 |
cttttgtcaaagtgaaacccaataagttgaactaactaaaaattgcaaaagctcttgatggttcttccgaactaccctccttcaaatctatctcaatcta |
37180413 |
T |
|
| Q |
167 |
tataagaccatccactacccctttccttctcat |
199 |
Q |
| |
|
|||||||||| |||||| |||| | |||||||| |
|
|
| T |
37180412 |
tataagaccacccactatccctatgcttctcat |
37180380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 37189365 - 37189474
Alignment:
| Q |
92 |
aagttgaactaacttaaaattgcaaaagctctt-atagttc-tccaaacaactctccttcaaatctctctcactctatataagaccatccactacccctt |
189 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| || |||| ||| ||| || ||||||||||||||||||| ||||||||||| || |||||| |||| |
|
|
| T |
37189365 |
aagttgaactaactaaaaattgcaaaagctcttgatggttcatccgaactaccctccttcaaatctctctcaatctatataagatcacccactatcccta |
37189464 |
T |
|
| Q |
190 |
tccttctcat |
199 |
Q |
| |
|
| |||||||| |
|
|
| T |
37189465 |
tgcttctcat |
37189474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 199
Target Start/End: Complemental strand, 38704569 - 38704434
Alignment:
| Q |
64 |
aaatgcttttgtcaaagtgaaacacaggaagttgaactaacttaaaattgcaaaagctcttatagttctccaaacaactctccttcaaatctctctcact |
163 |
Q |
| |
|
||||| |||||| ||||| ||||||||||||||||| |||||||| |||||||| ||| |||| |||||||| | || | ||||||||||| ||| |
|
|
| T |
38704569 |
aaatggttttgtgaaagtaaaacacaggaagttgaagtaacttaagattgcaaatgcttttattattctccaagctaccttgattcaaatctcttctact |
38704470 |
T |
|
| Q |
164 |
ctatataagaccatccactacccctttccttctcat |
199 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||| |||| |
|
|
| T |
38704469 |
ctatataaaaccatccactatccctttgcttttcat |
38704434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 199
Target Start/End: Complemental strand, 37188197 - 37188052
Alignment:
| Q |
65 |
aatgcttttgtcaaagtgaaacacaggaagttgaactaacttaa--------aattgcaaaagctctta-tagttctccaaacaactctccttcaaatct |
155 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| ||| |||| || |||||||||||||| || | ||||||||||| || ||||||||||||| |
|
|
| T |
37188197 |
aatgattttgtcaaagtgaaacagaggaagttaaacaaactaaagaaataaaaattgcaaaagctcgtagttgttctccaaactaccctccttcaaatct |
37188098 |
T |
|
| Q |
156 |
ctctcactctatata--agaccatccactacccctttccttctcat |
199 |
Q |
| |
|
|| |||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
37188097 |
tgcttactctatatataagaccatccactactcctttccttctcat |
37188052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University