View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_453 (Length: 214)
Name: NF9913A_low_453
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_453 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 54423264 - 54423471
Alignment:
| Q |
1 |
accataatttattgcttgcccggatgcatgctcataatgagagagcttccttgagatgttgcgcttcagccattgttgctttacaaaat-aaaaaactgg |
99 |
Q |
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| T |
54423264 |
accataatttattgcttgcccggatgcatgctcataatgagagagtttccttgagatgttgcacttcagccattgttgctttacaaaataaaaaaactgt |
54423363 |
T |
|
| Q |
100 |
catctgcaaataataagtgactgataggcggggctgtgcgacagatacgagtgccgggcatcttgcctcttaactcgctg-ttttttatggatgctgata |
198 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
54423364 |
catctgtaaataataagtgactgataggcggggctgtgcgacagatacgagtgccgtgtatcttgcctcttaactcgctgtttttttatggatgctgata |
54423463 |
T |
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| Q |
199 |
atccttct |
206 |
Q |
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|||||||| |
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| T |
54423464 |
atccttct |
54423471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 20127853 - 20127642
Alignment:
| Q |
1 |
accataatttattgcttgcccggatgcatgctcataatgagagagc--ttccttgagatgttgcgcttcagccattgttgctttacaaaataaaaaactg |
98 |
Q |
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| T |
20127853 |
accatagtttattgcttggccggatgcatgctcatagtgcgagagaatttccttgagatgttgcgtttcagccattgttgctttgcagaataaaaaactg |
20127754 |
T |
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| Q |
99 |
gcatctgcaaataataagtgactgataggcggggctgtgcgacagatacgagtgccgggcatcttgcctcttaactcgctgttttttatggatgctgata |
198 |
Q |
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| T |
20127753 |
tcatctgcaaataataggtgactgataggtggggctgtgcgacaaatacgagttccatgaacctttcctcttaattcatagttttttatagctgcagata |
20127654 |
T |
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| Q |
199 |
atccttctgcgc |
210 |
Q |
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|||||||||||| |
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| T |
20127653 |
atccttctgcgc |
20127642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 15162882 - 15162918
Alignment:
| Q |
82 |
tacaaaataaaaaactggcatctgcaaataataagtg |
118 |
Q |
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| T |
15162882 |
tacaaaataaaaaacagtcatctgcaaataataagtg |
15162918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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