View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_466 (Length: 210)
Name: NF9913A_low_466
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_466 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 36904045 - 36904218
Alignment:
| Q |
16 |
acatcatatataaaaacaaacaaggcaaaggaaataatagaagatcgtatactcatttagtaaaagaaaaagaaaacaagaacatatactgaaatataat |
115 |
Q |
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| T |
36904045 |
acatcatatataaaaacaaacaaggcaatggaaataatagaagatcgtatactcatttagtaaaagaaaaagaaaacaagaacatatactgaaatataac |
36904144 |
T |
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| Q |
116 |
ggccttataaggcaaactaaagcgattgttctaataaattttgaagcaaaccattatactaagaaccctaaaaa |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36904145 |
ggccttataaggcaaactaaagcgattgttctaataaattttgaagcaaaccattatactaagaaccccaaaaa |
36904218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 37073847 - 37073736
Alignment:
| Q |
33 |
aaacaaggcaaaggaaataatagaagatcgtatactcatttagtaaaagaaa-aagaaaacaagaacatatactgaaatataatggccttataaggcaaa |
131 |
Q |
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|||||| |||| |||||||||||||||| |||| ||||| |||||||||||| |||||| ||||||||| |||| |||||||||||||| |||||||| |
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| T |
37073847 |
aaacaaagcaatggaaataatagaagattgtatgctcatatagtaaaagaaagaagaaagcaagaacatctactcaaatataatggcct--taaggcaag |
37073750 |
T |
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| Q |
132 |
ctaaagcgattgtt |
145 |
Q |
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||||| |||||||| |
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| T |
37073749 |
ctaaatcgattgtt |
37073736 |
T |
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