View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_467 (Length: 210)

Name: NF9913A_low_467
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_467
NF9913A_low_467
[»] chr6 (11 HSPs)
chr6 (67-192)||(17095606-17095739)
chr6 (120-192)||(16870346-16870418)
chr6 (120-185)||(16985125-16985190)
chr6 (152-192)||(16794920-16794960)
chr6 (148-192)||(16841534-16841578)
chr6 (152-192)||(17067191-17067231)
chr6 (141-192)||(16975728-16975779)
chr6 (162-192)||(16655782-16655812)
chr6 (162-190)||(16558494-16558522)
chr6 (164-192)||(16778898-16778926)
chr6 (164-192)||(16784994-16785022)
[»] chr3 (2 HSPs)
chr3 (70-192)||(7055690-7055816)
chr3 (152-192)||(38941762-38941802)
[»] chr8 (1 HSPs)
chr8 (107-192)||(13375738-13375832)
[»] scaffold0133 (3 HSPs)
scaffold0133 (152-192)||(10558-10598)
scaffold0133 (152-192)||(15855-15895)
scaffold0133 (164-192)||(6222-6250)
[»] scaffold0256 (1 HSPs)
scaffold0256 (164-192)||(6881-6909)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 4e-43; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 67 - 192
Target Start/End: Original strand, 17095606 - 17095739
Alignment:
Q  67 tttgatatagtaagacaaaagataaatgaacaagtaaagagattcattaaatt--------ttaccacgaaatgttggttttacatcagattccaattta 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||| |||||| |||||||| |    
T  17095606 tttgatatagtaagacaaaagataaatgaacaagtaaagagattcattaaattaaattaaattaccacgaaatgttggttttgcatcagtttccaattca 17095705  T
Q  159 aattcaggaatgtgagctatcttatgccaatctt 192  Q
    |||||||||||||||||||||| |||||||||||    
T  17095706 aattcaggaatgtgagctatctaatgccaatctt 17095739  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 16870418 - 16870346
Alignment:
Q  120 ttaccacgaaatgttggttttacatcagattccaatttaaattcaggaatgtgagctatcttatgccaatctt 192  Q
    ||||||| |||||||||||||  |||||||||||| | |||||||||||||||||||||||||||||||||||    
T  16870418 ttaccacaaaatgttggttttttatcagattccaaataaaattcaggaatgtgagctatcttatgccaatctt 16870346  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 16985125 - 16985190
Alignment:
Q  120 ttaccacgaaatgttggttttacatcagattccaatttaaattcaggaatgtgagctatcttatgc 185  Q
    |||||| | |||||||||||| || ||||||| || | ||||||||||||||||||||||||||||    
T  16985125 ttaccagggaatgttggttttgcaccagattcaaaataaaattcaggaatgtgagctatcttatgc 16985190  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 16794920 - 16794960
Alignment:
Q  152 caatttaaattcaggaatgtgagctatcttatgccaatctt 192  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  16794920 caattcaaattcaggaacgtgagctatcttatgccaatctt 16794960  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 16841534 - 16841578
Alignment:
Q  148 attccaatttaaattcaggaatgtgagctatcttatgccaatctt 192  Q
    |||||||||| |||  |||||||||||||||||||||||||||||    
T  16841534 attccaatttcaatctaggaatgtgagctatcttatgccaatctt 16841578  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 17067191 - 17067231
Alignment:
Q  152 caatttaaattcaggaatgtgagctatcttatgccaatctt 192  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  17067191 caatctaaattcaggaatgtgagctattttatgccaatctt 17067231  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 16975779 - 16975728
Alignment:
Q  141 acatcagattccaatttaaattcaggaatgtgagctatcttatgccaatctt 192  Q
    |||||||||||||||||||||| |||||  |||||| |||||| ||||||||    
T  16975779 acatcagattccaatttaaatttaggaacatgagctgtcttataccaatctt 16975728  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 192
Target Start/End: Original strand, 16655782 - 16655812
Alignment:
Q  162 tcaggaatgtgagctatcttatgccaatctt 192  Q
    |||||||||||||||||||||||||||||||    
T  16655782 tcaggaatgtgagctatcttatgccaatctt 16655812  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 190
Target Start/End: Complemental strand, 16558522 - 16558494
Alignment:
Q  162 tcaggaatgtgagctatcttatgccaatc 190  Q
    |||||||||||||||||||||||||||||    
T  16558522 tcaggaatgtgagctatcttatgccaatc 16558494  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Original strand, 16778898 - 16778926
Alignment:
Q  164 aggaatgtgagctatcttatgccaatctt 192  Q
    |||||||||||||||||||||||||||||    
T  16778898 aggaatgtgagctatcttatgccaatctt 16778926  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Original strand, 16784994 - 16785022
Alignment:
Q  164 aggaatgtgagctatcttatgccaatctt 192  Q
    |||||||||||||||||||||||||||||    
T  16784994 aggaatgtgagctatcttatgccaatctt 16785022  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 70 - 192
Target Start/End: Complemental strand, 7055816 - 7055690
Alignment:
Q  70 gatatagtaagacaaaagataaatgaacaag-taaagagattcattaaatt---ttaccacgaaatgttggttttacatcagattccaatttaaattcag 165  Q
    |||||||||||| |||||| ||| ||| ||  ||||| |||| ||||||||   ||||||| ||||| || |||| |||||||||||||| | ||| | |    
T  7055816 gatatagtaagaaaaaagagaaaggaataatataaagggattgattaaattaaattaccacaaaatgatgtttttgcatcagattccaatatcaatgccg 7055717  T
Q  166 gaatgtgagctatcttatgccaatctt 192  Q
    |||||||||||||||||||||||||||    
T  7055716 gaatgtgagctatcttatgccaatctt 7055690  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 38941802 - 38941762
Alignment:
Q  152 caatttaaattcaggaatgtgagctatcttatgccaatctt 192  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  38941802 caattcaaattcaggaatgtgagctatcttatgccaatctt 38941762  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 13375738 - 13375832
Alignment:
Q  107 gattcattaaatt---ttaccacgaaatgttggttttacatca------gattccaatttaaattcaggaatgtgagctatcttatgccaatctt 192  Q
    |||||||||||||   ||||||| ||||||||||||| |||||      |||||||||| || |||||| |||||||||||||||| ||||||||    
T  13375738 gattcattaaattaaattaccacaaaatgttggttttgcatcaaatttagattccaattcaacttcaggtatgtgagctatcttatcccaatctt 13375832  T

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Target: scaffold0133 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 10558 - 10598
Alignment:
Q  152 caatttaaattcaggaatgtgagctatcttatgccaatctt 192  Q
    ||||| || ||||||||||||||||||||||||||||||||    
T  10558 caattcaacttcaggaatgtgagctatcttatgccaatctt 10598  T

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Target: scaffold0133; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 15855 - 15895
Alignment:
Q  152 caatttaaattcaggaatgtgagctatcttatgccaatctt 192  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  15855 caattgaaattgaggaatgtgagctatcttatgccaatctt 15895  T

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Target: scaffold0133; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Original strand, 6222 - 6250
Alignment:
Q  164 aggaatgtgagctatcttatgccaatctt 192  Q
    |||||||||||||||||||||||||||||    
T  6222 aggaatgtgagctatcttatgccaatctt 6250  T

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Target: scaffold0256 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Original strand, 6881 - 6909
Alignment:
Q  164 aggaatgtgagctatcttatgccaatctt 192  Q
    |||||||||||||||||||||||||||||    
T  6881 aggaatgtgagctatcttatgccaatctt 6909  T

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