View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_475 (Length: 208)
Name: NF9913A_low_475
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_475 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 6438781 - 6438606
Alignment:
| Q |
16 |
gctgaataaactgcacagtttattttctcatattgaacactatattctaaaaataacaaattataaaactaagtaacaagatatgaatatgtttccttaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6438781 |
gctgaataaactgcacagtttattttctcatattgaacactatattctaaaa-taacaaattataaaactaagtaacaagatatgaatatgtttccttaa |
6438683 |
T |
|
| Q |
116 |
ataatatatgaaaattcaaattttaaactatttgaaacaaactattttaatgtcaaaaaattatattgtatgatgtc |
192 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6438682 |
ataatatttgaaaattcaaattttaaactatttgaaacaaactattttaatgtcaaaaaattatattgtatgatgtc |
6438606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University