View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_479 (Length: 207)
Name: NF9913A_low_479
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_479 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 33606428 - 33606626
Alignment:
| Q |
9 |
gagtttggtgttttggaatgcaagtggggtgttcttggttacaccttctgctttaactgtgaatgaagttggttcgaggcagaatttcttggcgttgtat |
108 |
Q |
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| T |
33606428 |
gagtttggtgttttggaatgcaagtggggtgttcttggttacaccttctgctttaactgtgaatgaagttggttcgaggcagaatttcttggcgttgtat |
33606527 |
T |
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| Q |
109 |
tttcctggtttgaaggagaatgagtctactcctccatcaatggttggacattggtttgctgttccggttcctttgacttccatatatgttttgctttga |
207 |
Q |
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| T |
33606528 |
tttcctggtttgaaggagaatgagtctactcctccatcaatggttggacattggtttgctgttccggttcctttgacttccaaatatgttttgctttga |
33606626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 6962827 - 6962688
Alignment:
| Q |
64 |
actgtgaatgaagttggttcgaggcagaatttcttggcgttgtattttcctggtttgaaggagaatgagtctactcctccatcaatggttggacattggt |
163 |
Q |
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| T |
6962827 |
actgtgaatgaagttggttcaaggcagaatttttttgcattgtattttcctgacttgaaggagaatgagtcggatccaccttcaattgttggacattggt |
6962728 |
T |
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| Q |
164 |
ttgctgttccggttcctttgacttccatatatgttttgct |
203 |
Q |
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| T |
6962727 |
tagctgttcctgttcctttcacttctaagtatgttttgct |
6962688 |
T |
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