View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_480 (Length: 206)
Name: NF9913A_low_480
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_480 |
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Alignment Details
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 49294241 - 49294196
Alignment:
| Q |
79 |
catcacaatgtaaaagcccattcaacctaacctgcaaaaatccatg |
124 |
Q |
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| T |
49294241 |
catcacaatgtaaaagcccattcaacctaacctgcaaaaatccatg |
49294196 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 49294033 - 49294077
Alignment:
| Q |
37 |
ggatctagttcttcaagatttgttgattcaatatccagactccat |
81 |
Q |
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| T |
49294033 |
ggatctagttcttcaagatttgttgattcaatatccagactccat |
49294077 |
T |
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