View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_481 (Length: 206)
Name: NF9913A_low_481
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_481 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 47 - 206
Target Start/End: Complemental strand, 42444417 - 42444254
Alignment:
| Q |
47 |
aaatgaatatggaaactcaacacgaaagtgagagcaatgaaaaggaaataatccatgttcaagagaaactttactttctgcttgatggaagaatgaaaga |
146 |
Q |
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| T |
42444417 |
aaatgaatatggaaactcaacacgaaagtgagagcaatgaaaaggaaataatccatgttcaagagaaactttactttctgcttgatggaagaatgaaaga |
42444318 |
T |
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| Q |
147 |
ggtgtgctcta----aatacattcacaatgattatatatttatatgtaactttgtaagtaacac |
206 |
Q |
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| T |
42444317 |
agtgtgctctaaataaatacattcacaatgattatatatttatatgtaactttgtaagtaacac |
42444254 |
T |
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