View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_49 (Length: 406)

Name: NF9913A_low_49
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_49
NF9913A_low_49
[»] chr2 (7 HSPs)
chr2 (111-357)||(30005191-30005437)
chr2 (111-357)||(30061905-30062141)
chr2 (18-110)||(8749292-8749384)
chr2 (224-380)||(30165756-30165914)
chr2 (226-316)||(30245671-30245759)
chr2 (226-297)||(30782668-30782737)
chr2 (36-81)||(15223139-15223184)
[»] chr1 (2 HSPs)
chr1 (18-110)||(2700823-2700915)
chr1 (18-110)||(2705843-2705935)
[»] scaffold0013 (2 HSPs)
scaffold0013 (18-110)||(11321-11413)
scaffold0013 (18-115)||(16271-16369)
[»] chr6 (3 HSPs)
chr6 (18-110)||(6905618-6905712)
chr6 (21-110)||(18779466-18779555)
chr6 (18-110)||(13344052-13344139)
[»] chr3 (1 HSPs)
chr3 (18-74)||(10486588-10486643)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 111 - 357
Target Start/End: Original strand, 30005191 - 30005437
Alignment:
Q  111 ataatcatatatacttcactagaaattaaccatctattttatattgtatctgttactgttatgtgtcttgacaacacaggaaatatacgatttgtattct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30005191 ataatcatatatacttcactagaaattaaccatctattttatactctatgtgttactgttatgtgtcttgacaacacaggaaatatacaatttgtattct 30005290  T
Q  211 tatggaacagatcaagataaaacatataaagaccttgtcactctataaatgatgttgttaaagtcacgtgtctttgaaaagatgaatcatagagctgaaa 310  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  30005291 tatggaacagatcaagataaaacatataaagaccttgacactctataaatgatgttgttaaagtcacgtgtcttagaaaagatgaatcgtagagctgaaa 30005390  T
Q  311 acatagaagaaatgtatttttctcatttagaattggctcacttaaga 357  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||    
T  30005391 acatagaagaaatgtatttttctcatttagattcggctcacttaaga 30005437  T

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Target: chr2; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 111 - 357
Target Start/End: Original strand, 30061905 - 30062141
Alignment:
Q  111 ataatcatatatacttcactagaaattaaccatctattttatattgtatctgttactgttatgtgtcttgacaacacaggaaatatacgatttgtattct 210  Q
    |||||| |||| ||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||||||||||||| |||||||||||    
T  30061905 ataatcgtatacacttcactagaaattaaccatctattttatattctatgtgtaactgttatgtgttttgacaacacaggaaatatacaatttgtattct 30062004  T
Q  211 tatggaacagatcaagataaaacatataaagaccttgtcactctataaatgatgttgttaaagtcacgtgtctttgaaaagatgaatcatagagctgaaa 310  Q
    ||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  30062005 tatggaacagatcaagataaaacatataaaga----------ctataaatgatgttgttaaagtcacgtgtcttacaaaagatgaatcatagagctgaaa 30062094  T
Q  311 acatagaagaaatgtatttttctcatttagaattggctcacttaaga 357  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||    
T  30062095 acatagaagaaatgtatttttctcatttagattcggctcacttaaga 30062141  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 8749384 - 8749292
Alignment:
Q  18 aaggagttgactttgtatttctctcctataaaaggagccttttttccttcataataatataacagacaattatcacccatatgtttttctaca 110  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||| |||||||||    
T  8749384 aaggagttgactttgtatttctctcctataaaaggagcccttttttcttcataataatataacagaaaaatatcacccatatgcttttctaca 8749292  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 224 - 380
Target Start/End: Original strand, 30165756 - 30165914
Alignment:
Q  224 aagataaaacatataaagaccttgtcactctataaatgatgttgttaaagtcacgtgtctttgaaaagatgaatcatagagctgaaaacatagaagaa-- 321  Q
    |||| ||||| |||||| ||||   |||||||||||||||||||||||||||||||||| || |||| | |||||| |||||| ||||||||||||||      
T  30165756 aagagaaaacctataaaaacctcaacactctataaatgatgttgttaaagtcacgtgtcatt-aaaataggaatcacagagctaaaaacatagaagaaat 30165854  T
Q  322 -atgtatttttctcatttagaattggctcacttaagaaaatagttgtttcttacaagagc 380  Q
     |||||| | |||||||||| || |  ||||||||||||| |||||   |||||||||||    
T  30165855 tatgtatgtgtctcatttagtatcgtttcacttaagaaaaaagttgcggcttacaagagc 30165914  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 30245671 - 30245759
Alignment:
Q  226 gataaaacatataaagaccttgtcactctataaatgatgttgttaaagtcacgtgtctttgaaaagatgaatcatagagctgaaaacatag 316  Q
    |||||||| |||||| |||||| ||||  |||||| |||||||||||||||||| ||||  |||||| |||| ||||||||||||||||||    
T  30245671 gataaaacctataaacaccttgacact--ataaataatgttgttaaagtcacgtttcttgtaaaagaggaattatagagctgaaaacatag 30245759  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 30782668 - 30782737
Alignment:
Q  226 gataaaacatataaagaccttgtcactctataaatgatgttgttaaagtcacgtgtctttgaaaagatgaat 297  Q
    |||||||| ||||||||||||| ||||  |||||| |||||||||||||||||||||||  |||||| ||||    
T  30782668 gataaaacttataaagaccttgacact--ataaataatgttgttaaagtcacgtgtcttgtaaaagaggaat 30782737  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 15223184 - 15223139
Alignment:
Q  36 ttctctcctataaaaggagccttttttccttcataataatataaca 81  Q
    |||||||||||||||||||||  ||||| |||||||||||||||||    
T  15223184 ttctctcctataaaaggagccccttttcattcataataatataaca 15223139  T

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Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 2700915 - 2700823
Alignment:
Q  18 aaggagttgactttgtatttctctcctataaaaggagccttttttccttcataataatataacagacaattatcacccatatgtttttctaca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2700915 aaggagttgactttgtatttctctcctataaaaggagccttttttccttcataataatataacagacaattatcacccatatgtttttctaca 2700823  T

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Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 2705935 - 2705843
Alignment:
Q  18 aaggagttgactttgtatttctctcctataaaaggagccttttttccttcataataatataacagacaattatcacccatatgtttttctaca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2705935 aaggagttgactttgtatttctctcctataaaaggagccttttttccttcataataatataacagacaattatcacccatatgtttttctaca 2705843  T

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Target: scaffold0013 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 11321 - 11413
Alignment:
Q  18 aaggagttgactttgtatttctctcctataaaaggagccttttttccttcataataatataacagacaattatcacccatatgtttttctaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||    
T  11321 aaggagttgactttgtatttctctcctataaaaggagcctttttttcttcataataatataatagacaattatcacccatatgcttttctaca 11413  T

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Target: scaffold0013; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 16271 - 16369
Alignment:
Q  18 aaggagttgactttgtatttctctcctataaaaggagcc-ttttttccttcataataatataacagacaattatcacccatatgtttttctacaataat 115  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  16271 aaggagttgactttgtatttctctcttataaaaggagccctttttttcttcataataatataacagacaattatcacccatatgcttttctacagtaat 16369  T

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Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 6905712 - 6905618
Alignment:
Q  18 aaggagttgactttgtatttctctcctataaaaggagcctttttt--ccttcataataatataacagacaattatcacccatatgtttttctaca 110  Q
    |||||||||||| ||||||||||||||||||||||  ||||||||  |||||||||||||||||||||||||||| || ||||||||||||||||    
T  6905712 aaggagttgactatgtatttctctcctataaaaggttccttttttttccttcataataatataacagacaattattactcatatgtttttctaca 6905618  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 18779466 - 18779555
Alignment:
Q  21 gagttgactttgtatttctctcctataaaaggagccttttttccttcataataatataacagacaattatcacccatatgtttttctaca 110  Q
    ||||| ||||||||||||||||| |||||||||||| | ||| |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  18779466 gagttaactttgtatttctctccaataaaaggagccctcttttcttcataataatataagagacaattatcacccatatatttttctaca 18779555  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 13344052 - 13344139
Alignment:
Q  18 aaggagttgactttgtatttctctcctataaaaggagccttttttccttcataataatataacagacaattatcacccatatgtttttctaca 110  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| ||| ||||||| |||| |   ||||||||||||||| ||||||||||    
T  13344052 aaggagttgactttgtatttctctcctattaaaggagcccttttt-ctttataataa-ataaga---aattatcacccatatatttttctaca 13344139  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 10486588 - 10486643
Alignment:
Q  18 aaggagttgactttgtatttctctcctataaaaggagccttttttccttcataataa 74  Q
    |||||||| | ||||||||| ||||||||||||||||||  |||| |||||||||||    
T  10486588 aaggagttaattttgtatttttctcctataaaaggagcccctttt-cttcataataa 10486643  T

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