View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_491 (Length: 203)
Name: NF9913A_low_491
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_491 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 4302043 - 4301855
Alignment:
| Q |
1 |
actgttttggcagctaggaacatgatgaattctgaaaattggtttgaaagaactgaaaacacatttcctttgtcttctgcattactgctgatgtgtcccc |
100 |
Q |
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| T |
4302043 |
actgttttggcagctaggaacatgatgaattctgaaaattggtttgaaagaactgaaaacacatttcctttgtcttctgcattactgctgatgtgtcccc |
4301944 |
T |
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| Q |
101 |
ccactatataaacctcatcagttacaaatttcaagggttgtgttttatcaattcctcttttctcaaatacaatcccaagtgcaacacca |
189 |
Q |
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| T |
4301943 |
ccactatataaacctcatcagttacaaatttcaagggttgtgttttatcaattcctcttttctcaaatacaatcccaagtgcaatacca |
4301855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 49112454 - 49112546
Alignment:
| Q |
14 |
ctaggaacatgatgaattctgaaaattggtttgaaagaactgaaaacacatttcctttgtcttctgcattactgctgatgtgtccccccacta |
106 |
Q |
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| T |
49112454 |
ctaggaacatgttgaattctgcatattggttagaaggaactgaaaacacatttcctttgtcttctgcattactgctgatgtgcccccccacta |
49112546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 49100660 - 49100762
Alignment:
| Q |
14 |
ctaggaacatgatgaattctgaaaattggtttgaaagaactgaaaacacatttcctttgtcttctgcattactgctgatgtgtccccccactatataaac |
113 |
Q |
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| T |
49100660 |
ctaggaacatgttgaattctgcatattggtttgaagggactgaaaaaacatttcctttgtcttctgtattcctgctgatgtgtcctcccactacataaac |
49100759 |
T |
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| Q |
114 |
ctc |
116 |
Q |
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| T |
49100760 |
ctc |
49100762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 5085423 - 5085365
Alignment:
| Q |
113 |
cctcatcagttacaaatttcaagggttgtgttttatcaattcctcttttctcaaataca |
171 |
Q |
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| T |
5085423 |
cctcatcagttacaaatttcaagggttgtgtttcatcaattcctcttttctcgaataca |
5085365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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