View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_494 (Length: 202)
Name: NF9913A_low_494
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_494 |
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| [»] scaffold1920 (1 HSPs) |
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Alignment Details
Target: scaffold1920 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold1920
Description:
Target: scaffold1920; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 259 - 437
Alignment:
| Q |
13 |
ttggtgttcaacacattattgacaaatgttaatagaaatagtcttttaaattattatcggtgtcaacattttttatcaaaggtatatgttggtgtttgag |
112 |
Q |
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| T |
259 |
ttggtgttcaacacattattgacaaatgttattagaaatagtcttttaaatgattatcggtgtcaactttttttatcaaaggtatatgttggtgtttgag |
358 |
T |
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| Q |
113 |
acttttgtttgtccgacctattactgacacatcttattaaatttagaaactaaactttttcaaattatactgatgtcca |
191 |
Q |
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| T |
359 |
acttttgtttatccgacctattaccgacacatcttattaaatttagaaactaaattttttcaaattatactgatgtcca |
437 |
T |
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Target: chr8 (Bit Score: 143; Significance: 2e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 15360145 - 15359967
Alignment:
| Q |
13 |
ttggtgttcaacacattattgacaaatgttaatagaaatagtcttttaaattattatcggtgtcaacattttttatcaaaggtatatgttggtgtttgag |
112 |
Q |
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| T |
15360145 |
ttggtgttcaacacattattgacacatgttattagaaatagtcttttaaattattatcggtgttaattttttttatcaaaggtatatgttggtgtttgag |
15360046 |
T |
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| Q |
113 |
acttttgtttgtccgacctattactgacacatcttattaaatttagaaactaaactttttcaaattatactgatgtcca |
191 |
Q |
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| T |
15360045 |
acttgtgtttgtccgacctattaccgacacatcttattaaatttagaaactaaattttttcaaattataccgatgtcca |
15359967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 15358946 - 15358889
Alignment:
| Q |
13 |
ttggtgttcaacacattattgacaaatgttaatagaaatagtcttttaaattattatc |
70 |
Q |
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| T |
15358946 |
ttggtgttcaacagattattgacacttgttattacaaacagtcttttaaattattatc |
15358889 |
T |
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