View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_50 (Length: 404)

Name: NF9913A_low_50
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_50
NF9913A_low_50
[»] chr7 (1 HSPs)
chr7 (1-404)||(44826520-44826923)


Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 44826923 - 44826520
Alignment:
Q  1 tcaaagtcaaggtcgatgtcaagaaagagcaaatctaagaagttcaaatattcttcaaaatcttgtggacttccatccaaatggaaaagaagaagaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44826923 tcaaagtcaaggtcgatgtcaagaaagagcaaatctaagaagttcaaatattcttcaaaatcttgtggacttccatccaaatggaaaagaagaagaaata 44826824  T
Q  101 ccgatgagaaaaacaaactggaaaagcactatacaccttgtgaatgtgagggggcgtgtggaaagcaatgtacatgtcgtcttaatggttattgctgtga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  44826823 ccgatgagaaaaacaaactggaaaagcactatacaccttgtgaatgtgagggggcgtgtggaaagcaatgtccatgtcgtcttaatggtttttgctgtga 44826724  T
Q  201 aaaatattgtgggtatgtcaattttcatttaattatgttacttttcgatggaaaacaactatgttttcaatgtgatcagttatattttctaccttcaggt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44826723 aaaatattgtgggtatgtcaattttcatttaattatgttacttttcgatggaaaacaactatgttttcaatgtgatcagttatattttttaccttcaggt 44826624  T
Q  301 gttcaaagctctgtaaaaatctatttggaggatgtcagtgtactaagagtcagtgtagaagtcgacactgtccatgttttgcagcttcaagagattgtga 400  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44826623 gttcaaagctctgtaaaaatcgatttggaggatgtcagtgtactaagagtcagtgtagaagtcgacactgtccatgttttgcagcttcaagagattgtga 44826524  T
Q  401 ccct 404  Q
    ||||    
T  44826523 ccct 44826520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University