View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_55 (Length: 396)

Name: NF9913A_low_55
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_55
NF9913A_low_55
[»] chr3 (11 HSPs)
chr3 (141-286)||(6164315-6164460)
chr3 (144-286)||(13282953-13283100)
chr3 (144-286)||(6138998-6139142)
chr3 (212-286)||(6234104-6234178)
chr3 (217-287)||(6241889-6241959)
chr3 (219-286)||(6255118-6255185)
chr3 (343-380)||(6262404-6262441)
chr3 (343-380)||(9825145-9825182)
chr3 (343-380)||(6271844-6271881)
chr3 (217-257)||(6859282-6859322)
chr3 (217-257)||(7746936-7746976)
[»] chr7 (1 HSPs)
chr7 (343-393)||(35681680-35681730)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 141 - 286
Target Start/End: Complemental strand, 6164460 - 6164315
Alignment:
Q  141 aatccccatccttcttcctgtattgttgattatttcacttcataaatcttgaaatctatggcctaataatgaaacaactcaagatatatgcattgattat 240  Q
    ||||||||||| || |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  6164460 aatccccatccatcctcctgtcttgttgattatttcacttcataaatcttgaaatcaatggcctaataatgaaacaactcaagatatatgcattgatcat 6164361  T
Q  241 atctctctcgagccactttacgaaatccctccgacttatgtgtact 286  Q
    |||||||| ||||||| |||||||||||||| ||||||||||||||    
T  6164360 atctctcttgagccacattacgaaatccctctgacttatgtgtact 6164315  T

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Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 13282953 - 13283100
Alignment:
Q  144 ccccatccttcttcctgtattgttgatta-----tttcacttcataaatcttgaaatctatggcctaataatgaaacaactcaagatatatgcattgatt 238  Q
    |||||||| ||||||||| ||||||||||     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  13282953 ccccatccatcttcctgtcttgttgattactccatttcacttcataaatcttgaaatctatggcctaataataaaacaactcaagatatatgcattgatc 13283052  T
Q  239 atatctctctcgagccactttacgaaatccctccgacttatgtgtact 286  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||    
T  13283053 atatctctctcgagccactttacgaaatccctctgacttatgcgtact 13283100  T

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Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 6139142 - 6138998
Alignment:
Q  144 ccccatccttcttcctgtattgttgattatttcacttcataaatcttgaaatctatggcctaataatgaaacaactcaagatatatgcattgattatatc 243  Q
    |||||||| ||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6139142 ccccatccatcttcctgtcttgttgattatttcaatttataaatcttgaaatctatggcctaataatgaaacaactcaagatatatgcattgatcatatc 6139043  T
Q  244 tc--tctcgagccactttacgaaatccctccgacttatgtgtact 286  Q
    ||  |||||||||||||||||||||||||  ||| ||||||||||    
T  6139042 tctctctcgagccactttacgaaatccctttgacctatgtgtact 6138998  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 6234178 - 6234104
Alignment:
Q  212 aaacaactcaagatatatgcattgattatatctctctcgagccactttacgaaatccctccgacttatgtgtact 286  Q
    |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||| ||| ||||||||||    
T  6234178 aaacaactcaagatatatgcattgatcatatatctctcgagacactttacgaaatccctctgacctatgtgtact 6234104  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 6241959 - 6241889
Alignment:
Q  217 actcaagatatatgcattgattatatctctctcgagccactttacgaaatccctccgacttatgtgtactt 287  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||| |||||||||||    
T  6241959 actcaagatatatgcattgatcatatctctctcgagccactttacggaatccctctgacctatgtgtactt 6241889  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 6255185 - 6255118
Alignment:
Q  219 tcaagatatatgcattgattatatctctctcgagccactttacgaaatccctccgacttatgtgtact 286  Q
    |||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||| | ||||||||    
T  6255185 tcaagatataagcattgatcatatctctctcgagtcactttacgaaatccctctgacctgtgtgtact 6255118  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 6262441 - 6262404
Alignment:
Q  343 tgtatggaagatcatctagtcacctctgtggtgccaaa 380  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6262441 tgtatggaagatcatctagtcacctctgtggtgccaaa 6262404  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 343 - 380
Target Start/End: Original strand, 9825145 - 9825182
Alignment:
Q  343 tgtatggaagatcatctagtcacctctgtggtgccaaa 380  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9825145 tgtatggaagatcatctagtcacctctgtggtgccaaa 9825182  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 6271881 - 6271844
Alignment:
Q  343 tgtatggaagatcatctagtcacctctgtggtgccaaa 380  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  6271881 tgtatggaagagcatctagtcacctctgtggtgccaaa 6271844  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 6859282 - 6859322
Alignment:
Q  217 actcaagatatatgcattgattatatctctctcgagccact 257  Q
    ||||||||||||||||||||| || |||||||| |||||||    
T  6859282 actcaagatatatgcattgatcatgtctctctctagccact 6859322  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 7746976 - 7746936
Alignment:
Q  217 actcaagatatatgcattgattatatctctctcgagccact 257  Q
    ||||||| |||||| |||||| |||||||||||||||||||    
T  7746976 actcaaggtatatgtattgatcatatctctctcgagccact 7746936  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 35681680 - 35681730
Alignment:
Q  343 tgtatggaagatcatctagtcacctctgtggtgccaaaataacaccaaact 393  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35681680 tgtatggaagatcatctagtcccctctgtggtgccaaaataacaccaaact 35681730  T

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