View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_57 (Length: 395)
Name: NF9913A_low_57
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 9e-83; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 135 - 294
Target Start/End: Original strand, 30946450 - 30946609
Alignment:
| Q |
135 |
catcaatacttcttttaaagacttgtcatcttattttcaacctctttacaatattggacaattctttcttatttaatacaaatcagtcgaactatccaac |
234 |
Q |
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| T |
30946450 |
catcaatacttcttttaaagacttgtcatcttattttcaacctctttacaatattggacaattctttcttatttaatacaaatcagtcgaactatccaac |
30946549 |
T |
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| Q |
235 |
acccttattaaaagtatatcgatttagttgaggtttttaggcgtcaattataaataaaat |
294 |
Q |
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| T |
30946550 |
acccttattaaaagtatatcgatttagttaaggtttttaggcgtcaattataaataaaat |
30946609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 381
Target Start/End: Original strand, 30946668 - 30946744
Alignment:
| Q |
305 |
atttattggagagtccggaaaagtcggaggcaataatatgtcaatactccaggcgcaaaaatacttctcttgatgtc |
381 |
Q |
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| T |
30946668 |
atttattggagagtccggaaaagtcggaggcaacaatatgtcaatacttcagccgcaaaaatacttctcttgatgtc |
30946744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 30946357 - 30946396
Alignment:
| Q |
42 |
caccttcatcaacaagatggagctagttttcgggttactc |
81 |
Q |
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| T |
30946357 |
caccttcatcaacaagatggagctagttttcgggttactc |
30946396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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