View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_66 (Length: 385)
Name: NF9913A_low_66
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 5 - 383
Target Start/End: Original strand, 36935841 - 36936226
Alignment:
| Q |
5 |
tattaatttatggataatgccagttttagacatgatgtataataatgttatttactagtttgtttaatttctgcgtttctcgatgcataaccattttatg |
104 |
Q |
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| T |
36935841 |
tattaatttatggataatgccagttttagacatgatgtataataatgttatttactagtttgtttaatttctgcgtttctcgatgcataaccattttatg |
36935940 |
T |
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| Q |
105 |
atgttttttgggcacaaatataccacatcccttcctatgtataaatcatggcgaagttattcataaatatagacaactcctattcatggtgtttaa---- |
200 |
Q |
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| T |
36935941 |
atgttttttgggcacaaatataccacatcccttcctatgtataaatcatggcgaagttattcataaatatagactactcctattcatggtgtttaatctt |
36936040 |
T |
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| Q |
201 |
----tcttgctcggttatgaattattttctttggtttttgtatgctcagattgactacaggaagtctcgaaagtgaccattagatggttgtagaagagat |
296 |
Q |
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| T |
36936041 |
gcattcttgctcggttatgaatta-tttctttggtttttgtatgctcagattgactacaggtagtctcgaaagtgaccattagatggttttagaagagat |
36936139 |
T |
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| Q |
297 |
cgaggctggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaacacatttagggtttttcgacaaattgaa |
383 |
Q |
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| T |
36936140 |
cgaggttggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaacatatttagggtttttcgacaaattgaa |
36936226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 36956993 - 36957044
Alignment:
| Q |
303 |
tggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaa |
355 |
Q |
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| T |
36956993 |
tggagacatctcgcattagcaatatcctcagg-tgcaatttcagaaggtcaaa |
36957044 |
T |
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