View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_68 (Length: 379)
Name: NF9913A_low_68
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_68 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 40758474 - 40758314
Alignment:
| Q |
20 |
agttactactgcggtcttgcacaaaatttgactggattttccattgtaatattttaatgttaaatctattgaaaatagattccttgtgtatacattattc |
119 |
Q |
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| T |
40758474 |
agttactactgcggtcttgcacaaaatttgactggattttccattgtaatattttaatgttaaatctattgaaaatagattccttgtgtatacattattc |
40758375 |
T |
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| Q |
120 |
tttcggtataaataacatcagcataacagttctttcaacatcaataatatcacaatgctta |
180 |
Q |
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| T |
40758374 |
tttcagtataaataacatcagcataacaattctttcaacatcaataatatcacaatgctta |
40758314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 232 - 379
Target Start/End: Complemental strand, 40758262 - 40758115
Alignment:
| Q |
232 |
ggcagtggtttgatcatttatctcatgtctgatgtctctctgattcatattgtattcatgatggtggctgatcattcatatagcagtgtgcctacaagaa |
331 |
Q |
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| T |
40758262 |
ggcagtggtttgatcattcatctcatgtctgatgtctctatgattcatattatattcatgatggtggctgatcattcatattgcagtgtgcctacaagaa |
40758163 |
T |
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| Q |
332 |
gagacaacgtgataggtcattttgtattaaaatttgattgtaatttga |
379 |
Q |
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| T |
40758162 |
gagacaacgtgataggtcattttgtattaaaatttgattgtaatttga |
40758115 |
T |
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