View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_71 (Length: 376)
Name: NF9913A_low_71
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_71 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 374
Target Start/End: Complemental strand, 16188349 - 16187978
Alignment:
| Q |
7 |
tttggtgttgggcatattaaagtttgttgtaagataacatattcttttgacctcagatacgtgaaaagcattgtcttctgttaaataaatgccaatggtt |
106 |
Q |
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| T |
16188349 |
tttgatgttgggcatattaaagtttgttgtaagataacatattcttttgacctcagatacgtgaaaagcattgtcttctgttaaataaatgccaatggtt |
16188250 |
T |
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| Q |
107 |
tcaaaggtacgaagaggttgacacttatcatcccctgataattcttttaatctttgtagtgtaagctttaactttgacaagttatttcttttgttcttgt |
206 |
Q |
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| T |
16188249 |
tcaaaggtacgaagaggttgacacttatcatccc-tgataattcttttaatctttgtagtgtaagctttaactttgacaagttatttcttttgttcttgt |
16188151 |
T |
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| Q |
207 |
tttacaccaacttccattacttaacattgtttcaaaatttcctaggtagaagctgacaaacaat-------tcattgatccctcaagatgacttttatgt |
299 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16188150 |
tttacgccaacttccattacttaacattgtttcaaaatttcctaggtagaagctgacaaacaattcataattcattgatccctcaagatgacttttatgt |
16188051 |
T |
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| Q |
300 |
aattttatggtttgctatatttatcaattatttgcctcaagggctgctatctgtttttccacatcatatttgatt |
374 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16188050 |
aattttatggtttgc--tatttatcaattatttgcctcaagggctgctatctgtttttccacatcatatttgatt |
16187978 |
T |
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