View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_73 (Length: 365)
Name: NF9913A_low_73
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 359
Target Start/End: Original strand, 42514412 - 42514761
Alignment:
| Q |
12 |
gggatgaaagtgttgaccacaaaataaaagcatgagatttcagcaaaaataaaacattaaggtatatgctat--ggatccacatccagaattgacattgg |
109 |
Q |
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| T |
42514412 |
gggatgaaagtgttgaccacaaaataaaagcatgagatttcagcaaaaataaaacattagggtatatgctatatggatccacatccagaattgacattgg |
42514511 |
T |
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| Q |
110 |
catgtgataataatggacatgcaatggcccctgcatctactacgtattgattattgtagggataggacacacaccagaaatccacgtgtttcagaggaag |
209 |
Q |
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| T |
42514512 |
catgtgataataatggacatgcaatggcccctgcatctactacgtattgattattgtagggataggacacacaccagaaatccacgtgtttcagaggaag |
42514611 |
T |
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| Q |
210 |
gggagaatcgacaacgtattttattcaaaacatgaaaatgattaatgagattaactgacagatatgtcatctatatttaatcaatcttatctcaaaccat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42514612 |
gggagaatcgacaacgtattttattcaaaacatgaaaatgattaatgagattaactgacagatatgtcatctatatttaatcaatcttatctcaaaccat |
42514711 |
T |
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| Q |
310 |
taaatgcgtgtcgccatactcgaccaatttttcaaatcaggattactaca |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42514712 |
taaatgcgtgtcgccatactcgaccaatttttcaaatcaggattactaca |
42514761 |
T |
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