View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_78 (Length: 356)

Name: NF9913A_low_78
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_78
NF9913A_low_78
[»] chr4 (4 HSPs)
chr4 (5-325)||(5313554-5313878)
chr4 (92-198)||(16839429-16839535)
chr4 (1-191)||(11355130-11355322)
chr4 (258-310)||(11355384-11355436)
[»] chr1 (2 HSPs)
chr1 (1-200)||(30737674-30737877)
chr1 (110-237)||(28451574-28451701)
[»] chr6 (1 HSPs)
chr6 (92-306)||(7499954-7500168)
[»] chr5 (2 HSPs)
chr5 (182-325)||(33050399-33050542)
chr5 (92-306)||(9504983-9505197)
[»] chr2 (3 HSPs)
chr2 (92-198)||(45495640-45495746)
chr2 (92-198)||(45503382-45503488)
chr2 (101-306)||(5986896-5987101)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 325
Target Start/End: Complemental strand, 5313878 - 5313554
Alignment:
Q  5 tcttctttgacaatggagccttcaagatcaatctattcttgcaataaaaaa-cccttatagcatgtgcttccattttcgtagtaga--cattttgcagca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |  ||||||||||||    
T  5313878 tcttctttgacaatggagccttcaagatcaatctattcttgcaataaaaaaacccttgtagcatgtgcttccattttcatagtatatacattttgcagca 5313779  T
Q  102 attggcctatactaatgagattacttctcatatttggtacttataatacatcagtaatagatgctttcttgccatcttttctatgaatcaatactttact 201  Q
    |||||||| |||||||||||||||||||||||||| | || || ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||    
T  5313778 attggcctgtactaatgagattacttctcatattttgaacatacaatacatcagtgatatatgttttcttgccatcttttctatgaatcaatactttact 5313679  T
Q  202 agttcttttaacacaaactatactattatttgcaaatcttgtcttttcgctaattgaatcatctaactcggagaaccaagact-ttttacatgtcatgtg 300  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||| ||||||||||||| |||||| |||||| ||    
T  5313678 agttcctttaacacaaactatactattatttgcaaatcttgtctttttactaattgaaccatctaactcagagaaccaagacttttttacctgtcatatg 5313579  T
Q  301 atttgagcatcgtgtatccagatac 325  Q
    |||||||||||||||||||| ||||    
T  5313578 atttgagcatcgtgtatccatatac 5313554  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 16839429 - 16839535
Alignment:
Q  92 ttttgcagcaattggcctatactaatgagattacttctcatatttggtacttataatacatcagtaatagatgctttcttgccatcttttctatgaatca 191  Q
    |||||||| ||||| || |||||||||||||| |||||||| |||||||| || || |||||||| ||  | |||||||||||||| ||  |||||||||    
T  16839429 ttttgcagtaattgaccaatactaatgagattgcttctcatgtttggtacatacaacacatcagtgatgcaagctttcttgccatccttcttatgaatca 16839528  T
Q  192 atacttt 198  Q
     ||||||    
T  16839529 gtacttt 16839535  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 11355130 - 11355322
Alignment:
Q  1 gttctcttctttgacaatggagccttcaagatcaatctattcttgcaataaaaaacccttatagcatgtgcttccattttcgtagtaga--cattttgca 98  Q
    ||||| |||||||||||||||||||| |  ||||||||  ||||||  | ||||||| | ||||  ||| | ||||||||| ||||| |  | || ||||    
T  11355130 gttcttttctttgacaatggagcctttagaatcaatcttctcttgctgtcaaaaaccatcatagtttgttcctccattttcatagtatagcctttctgca 11355229  T
Q  99 gcaattggcctatactaatgagattacttctcatatttggtacttataatacatcagtaatagatgctttcttgccatcttttctatgaatca 191  Q
      || || ||||||||||||||||||||  |||| ||||| || ||||| ||| |||||||  | ||||||||||||||||| | ||||||||    
T  11355230 ataactgacctatactaatgagattactcttcatgtttggcacatataacacaccagtaatgcaagctttcttgccatctttcccatgaatca 11355322  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 11355384 - 11355436
Alignment:
Q  258 aatcatctaactcggagaaccaagactttttacatgtcatgtgatttgagcat 310  Q
    ||||||||||||| || ||||| ||| |||||| ||||||||| |||||||||    
T  11355384 aatcatctaactcagaaaaccatgacattttacctgtcatgtgctttgagcat 11355436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 30737877 - 30737674
Alignment:
Q  1 gttctcttctttgacaatggagccttcaagatcaatctattcttgcaataaaaaa--cccttatagcatgtgcttccattttcgtagtaga--cattttg 96  Q
    ||||||| ||||||||| || || |||| |||||| |||| ||| ||||||||||  |||| ||||  | ||||||||| ||  ||| | |  | |||||    
T  30737877 gttctctgctttgacaacggggctttcaggatcaacctatccttccaataaaaaaaaccctcatagtttttgcttccatcttaatagcacaacccttttg 30737778  T
Q  97 cagcaattggcctatactaatgagattacttctcatatttggtacttataatacatcagtaatagatgctttcttgccatcttttctatgaatcaatact 196  Q
    ||| ||||| |||||||||||||||||||||||||||||||| || ||||| |||||| | ||| ||||||||||||||| |||||||||||||||||||    
T  30737777 cagtaattgacctatactaatgagattacttctcatatttggcacatataacacatcaatgatacatgctttcttgccattttttctatgaatcaatact 30737678  T
Q  197 ttac 200  Q
    ||||    
T  30737677 ttac 30737674  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 237
Target Start/End: Original strand, 28451574 - 28451701
Alignment:
Q  110 atactaatgagattacttctcatatttggtacttataatacatcagtaatagatgctttcttgccatcttttctatgaatcaatactttactagttcttt 209  Q
    ||||| || ||||| |||||||||||| | || || || |||| ||| ||| |||||||||||||||||||| | |||||   |||||||| | ||| ||    
T  28451574 atactcataagattgcttctcatatttagcacataaaacacataagtgatatatgctttcttgccatcttttatgtgaattggtactttaccaattcctt 28451673  T
Q  210 taacacaaactatactattatttgcaaa 237  Q
     | |||| ||||| ||||||| ||||||    
T  28451674 cagcacacactattctattatctgcaaa 28451701  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 92 - 306
Target Start/End: Original strand, 7499954 - 7500168
Alignment:
Q  92 ttttgcagcaattggcctatactaatgagattacttctcatatttggtacttataatacatcagtaatagatgctttcttgccatcttttctatgaatca 191  Q
    |||||||| ||||  || |||||||||||||| |||||||| |||||||| || || |||||||| ||  | ||||||||| |||| || ||||||||||    
T  7499954 ttttgcagtaattaaccaatactaatgagattgcttctcatgtttggtacatacaacacatcagtgatgcaagctttcttgtcatccttcctatgaatca 7500053  T
Q  192 atactttactagttcttttaacacaaactatactattatttgcaaatcttgtcttttcgctaattgaatcatctaactcggagaaccaagactttttaca 291  Q
     |||||| | | | |  |   |||||||||||| ||| | |||||||||| | |||    ||| |||||||||||| || ||||||||||| || || ||    
T  7500054 gtactttcccaataccatctgcacaaactatacgattctctgcaaatcttatttttctattaactgaatcatctaattcagagaaccaagatttcttgca 7500153  T
Q  292 tgtcatgtgatttga 306  Q
    |||||||||||||||    
T  7500154 tgtcatgtgatttga 7500168  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 325
Target Start/End: Complemental strand, 33050542 - 33050399
Alignment:
Q  182 ctatgaatcaatactttactagttcttttaacacaaactatactattatttgcaaatcttgtcttttcgctaattgaatcatctaactcggagaaccaag 281  Q
    ||||||||||| || |||| | ||| || |||| || | |||||||||| ||| |||||| |||||    ||||||||| |||||| |  ||| ||||||    
T  33050542 ctatgaatcaacacattaccatttccttcaacataatcgatactattatctgcgaatcttatctttctattaattgaataatctaatttagagtaccaag 33050443  T
Q  282 actttttacatgtcatgtgatttgagcatcgtgtatccagatac 325  Q
    |||||| |||||| |||| ||||||||||| |||||||||||||    
T  33050442 acttttaacatgttatgtaatttgagcatcatgtatccagatac 33050399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 306
Target Start/End: Complemental strand, 9505197 - 9504983
Alignment:
Q  92 ttttgcagcaattggcctatactaatgagattacttctcatatttggtacttataatacatcagtaatagatgctttcttgccatcttttctatgaatca 191  Q
    ||||| || ||||| || |||||||||||||| |||||||| |||||||| || || |||||||| ||  | ||||||||| |||| || |||||||| |    
T  9505197 ttttgtagtaattgaccaatactaatgagattgcttctcatgtttggtacatacaacacatcagtgatgcaagctttcttgacatccttcctatgaatta 9505098  T
Q  192 atactttactagttcttttaacacaaactatactattatttgcaaatcttgtcttttcgctaattgaatcatctaactcggagaaccaagactttttaca 291  Q
     |||||| | | | |      ||||||||||| |||| | |||||||||| | |||    ||| |||||||||||| || ||||||||||| || || ||    
T  9505097 gtactttcccaataccagctgcacaaactataatattgtctgcaaatcttatttttctattaactgaatcatctaattcagagaaccaagatttcttgca 9504998  T
Q  292 tgtcatgtgatttga 306  Q
    |||||||||||||||    
T  9504997 tgtcatgtgatttga 9504983  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 45495640 - 45495746
Alignment:
Q  92 ttttgcagcaattggcctatactaatgagattacttctcatatttggtacttataatacatcagtaatagatgctttcttgccatcttttctatgaatca 191  Q
    |||||||| ||||| || |||||||||||||| |||||||| |||||||| || || |||||| | ||  | |||||||||||||| || ||||||||||    
T  45495640 ttttgcagtaattgaccaatactaatgagattgcttctcatgtttggtacatacaacacatcaatgatgcaagctttcttgccatccttcctatgaatca 45495739  T
Q  192 atacttt 198  Q
     ||||||    
T  45495740 gtacttt 45495746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 45503382 - 45503488
Alignment:
Q  92 ttttgcagcaattggcctatactaatgagattacttctcatatttggtacttataatacatcagtaatagatgctttcttgccatcttttctatgaatca 191  Q
    |||||||| ||||| || |||||||||||||| |||||||| |||||||| || || |||||| | ||  | |||||||||||||| || ||||||||||    
T  45503382 ttttgcagtaattgaccaatactaatgagattgcttctcatgtttggtacatacaacacatcaatgatgcaagctttcttgccatccttcctatgaatca 45503481  T
Q  192 atacttt 198  Q
     ||||||    
T  45503482 gtacttt 45503488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 101 - 306
Target Start/End: Complemental strand, 5987101 - 5986896
Alignment:
Q  101 aattggcctatactaatgagattacttctcatatttggtacttataatacatcagtaatagatgctttcttgccatcttttctatgaatcaatactttac 200  Q
    ||||| || |||||||||||| |  ||||||| |||||||| || || |||||||| ||  | |||||||||||||| || |||||||||| |||||| |    
T  5987101 aattgaccaatactaatgagactgtttctcatgtttggtacatacaacacatcagtgatgcaagctttcttgccatccttcctatgaatcagtacttttc 5987002  T
Q  201 tagttcttttaacacaaactatactattatttgcaaatcttgtcttttcgctaattgaatcatctaactcggagaaccaagactttttacatgtcatgtg 300  Q
     | |  |     |||||||||||||||| | |||||||||| | |||  | ||| |||||||||||| || ||||||||||| || ||   |||||||||    
T  5987001 caatattagctgcacaaactatactattgtctgcaaatcttatttttctgttaactgaatcatctaattcagagaaccaagatttcttgtctgtcatgtg 5986902  T
Q  301 atttga 306  Q
    ||||||    
T  5986901 atttga 5986896  T

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